RNA 3D Hub //

4V88 Internal, Hairpin and 3-way Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_4V88_0011/A1/38:45No text annotation
Not in a motif group		homologous
HL_5TBW_001
HL_06192.2
HL_4V88_0021/A1/69:74No text annotation
Not in a motif group		homologous
HL_5TBW_002
HL_02862.2
HL_4V88_0031/A1/90:96No text annotation
Not in a motif group		homologous
HL_5TBW_003
HL_67216.7
HL_4V88_0041/A1/132:136No text annotation
Not in a motif group		homologous
HL_5TBW_004
HL_98426.1
HL_4V88_0051/A1/194:201T-loop with 1 bulged base
Not in a motif group		homologous
HL_5TBW_005
HL_89380.2
HL_4V88_0061/A1/208:212No text annotation
Not in a motif group		homologous
HL_5TBW_006
HL_98984.2
HL_4V88_0071/A1/216:224No text annotation
Not in a motif group		homologous
HL_5TBW_007
HL_08002.8
HL_4V88_0081/A1/278:287No text annotation
Not in a motif group		homologous
HL_5TBW_008
HL_71554.2
HL_4V88_0091/A1/303:312No text annotation
Not in a motif group		homologous
HL_5TBW_009
HL_12078.2
HL_4V88_0101/A1/357:362Other HL
Not in a motif group		homologous
HL_5TBW_010
HL_42097.1
HL_4V88_0111/A1/382:387GNRA
Not in a motif group		homologous
HL_5TBW_011
HL_42097.1
HL_4V88_0121/A1/543:548No text annotation
Not in a motif group		homologous
HL_5TBW_012
HL_86373.2
HL_4V88_0131/A1/599:604GNRA
Not in a motif group		homologous
HL_5TBW_013
HL_42097.1
HL_4V88_0141/A1/640:649T-loop with 2 stacked bulged bases
Not in a motif group		homologous
HL_5TBW_014
HL_89380.2
HL_4V88_0151/A1/686:694No text annotation
Not in a motif group		homologous
HL_5TBW_015
HL_03345.1
HL_4V88_0161/A1/707:712GNRA
Not in a motif group		homologous
HL_5TBW_016
HL_42097.1
HL_4V88_0171/A1/732:737GNRA
Not in a motif group		homologous
HL_5TBW_017
HL_42097.1
HL_4V88_0181/A1/763:768No text annotation
Not in a motif group		homologous
HL_5TBW_018
HL_34168.2
HL_4V88_0191/A1/844:849GNRA
Not in a motif group		homologous
HL_5TBW_019
HL_42097.1
HL_4V88_0201/A1/876:885No text annotation
Not in a motif group		homologous
HL_5TBW_020
HL_39334.6
HL_4V88_0211/A1/910:918No text annotation
Not in a motif group		homologous
HL_5TBW_021
HL_33817.1
HL_4V88_0221/A1/958:963No text annotation
Not in a motif group		homologous
HL_8C3A_022
HL_96598.1
HL_4V88_0231/A1/1023:1029GNRA
Not in a motif group		homologous
HL_5TBW_023
HL_42097.1
HL_4V88_0241/A1/1076:1083No text annotation
Not in a motif group		geometric
HL_5TBW_024
HL_71554.2
HL_4V88_0251/A1/1126:1132GNRA
Not in a motif group		homologous
HL_5TBW_025
HL_42097.1
HL_4V88_0261/A1/1148:1155No text annotation
Not in a motif group		homologous
HL_5TBW_026
HL_64430.2
HL_4V88_0271/A1/1239:1249No text annotation
Not in a motif group		homologous
HL_5TBW_027
HL_07145.1
HL_4V88_0281/A1/1266:1275No text annotation
Not in a motif group		geometric
HL_5TBW_028
HL_09136.1
HL_4V88_0291/A1/1347:1357No text annotation
Not in a motif group		homologous
HL_5TBW_029
HL_89098.1
HL_4V88_0301/A1/1403:1408GNRA
Not in a motif group		homologous
HL_5TBW_030
HL_42097.1
HL_4V88_0311/A1/1462:1470T-loop with 2 stacked bulged bases
Not in a motif group		homologous
HL_5TBW_031
HL_89380.2
HL_4V88_0321/A1/1506:1512No text annotation
Not in a motif group		homologous
HL_5TBW_032
HL_46680.1
HL_4V88_0331/A1/1544:1549Other HL
Not in a motif group		homologous
HL_5TBW_033
HL_76539.2
HL_4V88_0351/A1/1599:1608No text annotation
Not in a motif group		homologous
HL_5TBW_035
HL_69023.2
HL_4V88_0361/A1/1634:1639GNRA
Not in a motif group		homologous
HL_5TBW_036
HL_42097.1
HL_4V88_0371/A1/1680:1688No text annotation
Not in a motif group		homologous
HL_5TBW_037
HL_60812.1
HL_4V88_0381/A1/1719:1725No text annotation
Not in a motif group		homologous
HL_5TBW_038
HL_86373.2
HL_4V88_0391/A1/1759:1766No text annotation
Not in a motif group
HL_4V88_0401/A1/1792:1796No text annotation
Not in a motif group		homologous
HL_5TBW_040
HL_38927.2
HL_4V88_0411/A1/1844:1851No text annotation
Not in a motif group		homologous
HL_5TBW_041
HL_64430.2
HL_4V88_0421/A1/1862:1868GNRA with one bulged base
Not in a motif group		homologous
HL_5TBW_042
HL_42097.1
HL_4V88_0431/A1/1923:1928UNCG
Not in a motif group		geometric
HL_5TBW_043
HL_03562.2
HL_4V88_0451/A1/2110:2114No text annotation
Not in a motif group		homologous
HL_5TBW_045
HL_20062.1
HL_4V88_0461/A1/2135:2145No text annotation
Not in a motif group		homologous
HL_5TBW_046
HL_43613.5
HL_4V88_0471/A1/2164:2170GNRA
Not in a motif group		homologous
HL_5TBW_047
HL_42097.1
HL_4V88_0481/A1/2220:2225Other HL
Not in a motif group		homologous
HL_5TBW_048
HL_42097.1
HL_4V88_0491/A1/2253:2263No text annotation
Not in a motif group		homologous
HL_5TBW_049
HL_71924.2
HL_4V88_0501/A1/2292:2300No text annotation
Not in a motif group		homologous
HL_5TBW_050
HL_51824.1
HL_4V88_0511/A1/2369:2378No text annotation
Not in a motif group		homologous
HL_5TBW_051
HL_90642.6
HL_4V88_0531/A1/2534:2545No text annotation
Not in a motif group
HL_4V88_0541/A1/2568:2573No text annotation
Not in a motif group		homologous
HL_5TBW_053
HL_30239.1
HL_4V88_0551/A1/2616:2624No text annotation
Not in a motif group		homologous
HL_5TBW_054
HL_53171.2
HL_4V88_0561/A1/2633:2645No text annotation
Not in a motif group		homologous
HL_5TBW_055
HL_19870.6
HL_4V88_0571/A1/2673:2681No text annotation
Not in a motif group		homologous
HL_5TBW_056
HL_76406.4
HL_4V88_0581/A1/2693:2700No text annotation
Not in a motif group		homologous
HL_5TBW_057
HL_12078.2
HL_4V88_0591/A1/2724:2732No text annotation
Not in a motif group		homologous
HL_5TBW_058
HL_92229.2
HL_4V88_0601/A1/2744:2749GNRA
Not in a motif group		homologous
HL_5TBW_059
HL_42097.1
HL_4V88_0611/A1/2776:2784No text annotation
Not in a motif group		homologous
HL_5TBW_060
HL_96598.1
HL_4V88_0621/A1/2840:2848No text annotation
Not in a motif group		homologous
HL_5TBW_061
HL_06192.2
HL_4V88_0631/A1/2897:2904No text annotation
Not in a motif group		homologous
HL_5TBW_062
HL_88526.2
HL_4V88_0641/A1/2920:2926No text annotation
Not in a motif group		geometric
HL_5TBW_063
HL_43656.2
HL_4V88_0651/A1/2963:2968GNRA
Not in a motif group		homologous
HL_5TBW_064
HL_42097.1
HL_4V88_0661/A1/3025:3030GNRA
Not in a motif group		geometric
HL_5TBW_065
HL_42097.1
HL_4V88_0671/A1/3068:3073Ribsomal LSU H95
Not in a motif group		homologous
HL_5TBW_066
HL_46680.1
HL_4V88_0681/A1/3110:3124No text annotation
Not in a motif group		homologous
HL_5TBW_067
HL_56677.7
HL_4V88_0691/A1/3194:3197No text annotation
Not in a motif group		homologous
HL_5TBW_068
HL_98426.1
HL_4V88_0701/A1/3240:3247No text annotation
Not in a motif group		homologous
HL_5TBW_069
HL_14449.2
HL_4V88_0711/A1/3303:3311No text annotation
Not in a motif group		homologous
HL_5TBW_070
HL_27930.1
HL_4V88_0721/A1/3350:3353No text annotation
Not in a motif group		homologous
HL_8C3A_072
HL_53837.1
HL_4V88_0731/A2/7:17No text annotation
Not in a motif group		homologous
HL_4V88_186
HL_89881.2
HL_4V88_0741/A2/70:81No text annotation
Not in a motif group		homologous
HL_4V88_187
HL_40069.1
HL_4V88_0751/A2/154:160Other HL
Not in a motif group		homologous
HL_4V88_188
HL_76539.2
HL_4V88_0761/A2/190:195No text annotation
Not in a motif group		homologous
HL_4V88_189
HL_77805.2
HL_4V88_0771/A2/230:235No text annotation
Not in a motif group		geometric
HL_6CZR_082
HL_03562.2
HL_4V88_0781/A2/243:250T-loop with 1 bulged base
Not in a motif group		homologous
HL_4V88_191
HL_27930.1
HL_4V88_0791/A2/276:279No text annotation
Not in a motif group		homologous
HL_4V88_192
HL_53837.1
HL_4V88_0801/A2/330:338No text annotation
Not in a motif group		homologous
HL_4V88_193
HL_69023.2
HL_4V88_0811/A2/368:373No text annotation
Not in a motif group		homologous
HL_4V88_194
HL_50142.2
HL_4V88_0821/A2/393:404No text annotation
Not in a motif group		homologous
HL_4V88_195
HL_84288.1
HL_4V88_0831/A2/414:419UNCG
Not in a motif group		homologous
HL_4V88_196
HL_03562.2
HL_4V88_0841/A2/450:456No text annotation
Not in a motif group		homologous
HL_4V88_197
HL_09136.1
HL_4V88_0851/A2/487:500No text annotation
Not in a motif group
HL_4V88_0861/A2/520:532No text annotation
Not in a motif group		homologous
HL_4V88_199
HL_06285.2
HL_4V88_0871/A2/569:574Other HL
Not in a motif group		homologous
HL_4V88_200
HL_53845.1
HL_4V88_0881/A2/703:735No text annotation
Not in a motif group
HL_4V88_0891/A2/764:772No text annotation
Not in a motif group		homologous
HL_4V88_203
HL_46766.2
HL_4V88_0901/A2/777:783No text annotation
Not in a motif group
HL_4V88_0911/A2/829:843No text annotation
Not in a motif group		homologous
HL_4V88_205
HL_96598.1
HL_4V88_0921/A2/900:909No text annotation
Not in a motif group		homologous
HL_4V88_206
HL_12326.1
HL_4V88_0931/A2/937:942Other HL
Not in a motif group		homologous
HL_4V88_207
HL_87030.2
HL_4V88_0941/A2/997:1007No text annotation
Not in a motif group		homologous
HL_4V88_208
HL_12326.1
HL_4V88_0951/A2/1054:1065No text annotation
Not in a motif group
HL_4V88_0961/A2/1084:1089Other HL
Not in a motif group		homologous
HL_4V88_210
HL_42097.1
HL_4V88_0971/A2/1121:1126GNRA
Not in a motif group		homologous
HL_4V88_211
HL_42097.1
HL_4V88_0981/A2/1188:1197No text annotation
Not in a motif group		homologous
HL_4V88_212
HL_73530.2
HL_4V88_0991/A2/1238:1247No text annotation
Not in a motif group		homologous
HL_4V88_213
HL_53597.2
HL_4V88_1001/A2/1296:1301GNRA
Not in a motif group		homologous
HL_4V88_214
HL_42097.1
HL_4V88_1011/A2/1309:1316No text annotation
Not in a motif group		homologous
HL_4V88_215
HL_71554.2
HL_4V88_1021/A2/1359:1364No text annotation
Not in a motif group		homologous
HL_4V88_216
HL_10278.1
HL_4V88_1031/A2/1396:1402No text annotation
Not in a motif group		homologous
HL_4V88_217
HL_42097.1
HL_4V88_1041/A2/1501:1506GNRA
Not in a motif group		homologous
HL_4V88_218
HL_42097.1
HL_4V88_1051/A2/1550:1561No text annotation
Not in a motif group		homologous
HL_4V88_219
HL_22554.1
HL_4V88_1061/A2/1594:1602No text annotation
Not in a motif group		homologous
HL_4V88_220
HL_60812.1
HL_4V88_1071/A2/1690:1711No text annotation
Not in a motif group
HL_4V88_1081/A2/1778:1783Other HL
Not in a motif group		homologous
HL_4V88_222
HL_16173.1
HL_4V88_1091/A3/36:41No text annotation
Not in a motif group		geometric
HL_5TBW_185
HL_87939.1
HL_4V88_1101/A3/88:93GNRA
Not in a motif group		homologous
HL_5TBW_186
HL_42097.1
HL_4V88_1111/A4/73:78Other HL
Not in a motif group		geometric
HL_5TBW_074
HL_50142.2
HL_4V88_1121/A4/108:114No text annotation
Not in a motif group		homologous
HL_5TBW_075
HL_87939.1
HL_4V88_1131/A4/124:129No text annotation
Not in a motif group		homologous
HL_5TBW_076
HL_96851.2
HL_4V88_1141/A5/38:45No text annotation
Not in a motif group		homologous
HL_5TBW_001
HL_06192.2
HL_4V88_1151/A5/69:74No text annotation
Not in a motif group		homologous
HL_5TBW_002
HL_02862.2
HL_4V88_1161/A5/90:96No text annotation
Not in a motif group		homologous
HL_5TBW_003
HL_67216.7
HL_4V88_1171/A5/132:136No text annotation
Not in a motif group		homologous
HL_5TBW_004
HL_98426.1
HL_4V88_1181/A5/194:201T-loop with 1 bulged base
Not in a motif group		homologous
HL_5TBW_005
HL_89380.2
HL_4V88_1191/A5/208:212No text annotation
Not in a motif group		homologous
HL_5TBW_006
HL_98984.2
HL_4V88_1201/A5/216:224No text annotation
Not in a motif group		homologous
HL_5TBW_007
HL_08002.8
HL_4V88_1211/A5/278:287No text annotation
Not in a motif group		homologous
HL_5TBW_008
HL_71554.2
HL_4V88_1221/A5/303:312No text annotation
Not in a motif group		homologous
HL_5TBW_009
HL_12078.2
HL_4V88_1231/A5/357:362Other HL
Not in a motif group		homologous
HL_5TBW_010
HL_42097.1
HL_4V88_1241/A5/382:387No text annotation
Not in a motif group		homologous
HL_8C3A_011
HL_42097.1
HL_4V88_1251/A5/543:548No text annotation
Not in a motif group		geometric
HL_2IZN_001
HL_97896.2
HL_4V88_1261/A5/599:604GNRA
Not in a motif group		homologous
HL_5TBW_013
HL_42097.1
HL_4V88_1271/A5/640:649T-loop with 2 stacked bulged bases
Not in a motif group		homologous
HL_5TBW_014
HL_89380.2
HL_4V88_1281/A5/686:694No text annotation
Not in a motif group		homologous
HL_5TBW_015
HL_03345.1
HL_4V88_1291/A5/707:712No text annotation
Not in a motif group		homologous
HL_8C3A_016
HL_42097.1
HL_4V88_1301/A5/732:737GNRA
Not in a motif group		homologous
HL_5TBW_017
HL_42097.1
HL_4V88_1311/A5/763:768No text annotation
Not in a motif group		geometric
HL_5TBW_018
HL_34168.2
HL_4V88_1321/A5/844:849GNRA
Not in a motif group		homologous
HL_5TBW_019
HL_42097.1
HL_4V88_1331/A5/876:885No text annotation
Not in a motif group		homologous
HL_5TBW_020
HL_39334.6
HL_4V88_1341/A5/910:918No text annotation
Not in a motif group		homologous
HL_5TBW_021
HL_33817.1
HL_4V88_1351/A5/958:963No text annotation
Not in a motif group		homologous
HL_8C3A_022
HL_96598.1
HL_4V88_1361/A5/1023:1029No text annotation
Not in a motif group
HL_4V88_1371/A5/1076:1083No text annotation
Not in a motif group		geometric
HL_5TBW_024
HL_71554.2
HL_4V88_1381/A5/1126:1132GNRA
Not in a motif group		homologous
HL_5TBW_025
HL_42097.1
HL_4V88_1391/A5/1148:1155No text annotation
Not in a motif group		homologous
HL_5TBW_026
HL_64430.2
HL_4V88_1401/A5/1239:1249No text annotation
Not in a motif group		homologous
HL_8C3A_027
HL_07145.1
HL_4V88_1411/A5/1267:1274No text annotation
Not in a motif group		homologous
HL_8C3A_028
HL_84085.2
HL_4V88_1421/A5/1347:1357No text annotation
Not in a motif group
HL_4V88_1431/A5/1403:1408GNRA
Not in a motif group		homologous
HL_5TBW_030
HL_42097.1
HL_4V88_1441/A5/1462:1470T-loop with 2 stacked bulged bases
Not in a motif group		homologous
HL_5TBW_031
HL_89380.2
HL_4V88_1451/A5/1506:1512No text annotation
Not in a motif group		homologous
HL_5TBW_032
HL_46680.1
HL_4V88_1461/A5/1544:1549Other HL
Not in a motif group		homologous
HL_5TBW_033
HL_76539.2
HL_4V88_1471/A5/1562:1577No text annotation
Not in a motif group
HL_4V88_1481/A5/1599:1608No text annotation
Not in a motif group		homologous
HL_5TBW_035
HL_69023.2
HL_4V88_1491/A5/1634:1639GNRA
Not in a motif group		homologous
HL_5TBW_036
HL_42097.1
HL_4V88_1501/A5/1680:1688No text annotation
Not in a motif group		homologous
HL_5TBW_037
HL_60812.1
HL_4V88_1511/A5/1719:1725No text annotation
Not in a motif group		homologous
HL_5TBW_038
HL_86373.2
HL_4V88_1521/A5/1760:1765Other HL
Not in a motif group		homologous
HL_5TBW_039
HL_56691.2
HL_4V88_1531/A5/1792:1796No text annotation
Not in a motif group		homologous
HL_5TBW_040
HL_38927.2
HL_4V88_1541/A5/1844:1851No text annotation
Not in a motif group		homologous
HL_5TBW_041
HL_64430.2
HL_4V88_1551/A5/1862:1868GNRA with one bulged base
Not in a motif group		homologous
HL_5TBW_042
HL_42097.1
HL_4V88_1561/A5/1923:1928UNCG
Not in a motif group		homologous
HL_5TBW_043
HL_03562.2
HL_4V88_1581/A5/2110:2114No text annotation
Not in a motif group		homologous
HL_5TBW_045
HL_20062.1
HL_4V88_1591/A5/2135:2145No text annotation
Not in a motif group		homologous
HL_5TBW_046
HL_43613.5
HL_4V88_1601/A5/2164:2170GNRA
Not in a motif group		homologous
HL_5TBW_047
HL_42097.1
HL_4V88_1611/A5/2220:2225Other HL
Not in a motif group		homologous
HL_5TBW_048
HL_42097.1
HL_4V88_1621/A5/2253:2263No text annotation
Not in a motif group		homologous
HL_5TBW_049
HL_71924.2
HL_4V88_1631/A5/2292:2300No text annotation
Not in a motif group		homologous
HL_5TBW_050
HL_51824.1
HL_4V88_1641/A5/2369:2378No text annotation
Not in a motif group		homologous
HL_5TBW_051
HL_90642.6
HL_4V88_1661/A5/2534:2545No text annotation
Not in a motif group
HL_4V88_1671/A5/2568:2573No text annotation
Not in a motif group		geometric
HL_2Y8W_001
HL_01057.1
HL_4V88_1681/A5/2616:2624No text annotation
Not in a motif group		homologous
HL_5TBW_054
HL_53171.2
HL_4V88_1691/A5/2633:2645No text annotation
Not in a motif group		homologous
HL_5TBW_055
HL_19870.6
HL_4V88_1701/A5/2673:2681No text annotation
Not in a motif group		homologous
HL_5TBW_056
HL_76406.4
HL_4V88_1711/A5/2693:2700No text annotation
Not in a motif group		homologous
HL_5TBW_057
HL_12078.2
HL_4V88_1721/A5/2724:2732No text annotation
Not in a motif group		homologous
HL_5TBW_058
HL_92229.2
HL_4V88_1731/A5/2744:2749GNRA
Not in a motif group		homologous
HL_5TBW_059
HL_42097.1
HL_4V88_1741/A5/2776:2784No text annotation
Not in a motif group		homologous
HL_5TBW_060
HL_96598.1
HL_4V88_1751/A5/2840:2848No text annotation
Not in a motif group		homologous
HL_5TBW_061
HL_06192.2
HL_4V88_1761/A5/2897:2904No text annotation
Not in a motif group		homologous
HL_5TBW_062
HL_88526.2
HL_4V88_1771/A5/2920:2926No text annotation
Not in a motif group		homologous
HL_5TBW_063
HL_43656.2
HL_4V88_1781/A5/2963:2968GNRA
Not in a motif group		homologous
HL_5TBW_064
HL_42097.1
HL_4V88_1791/A5/3025:3030GNRA
Not in a motif group		homologous
HL_5TBW_065
HL_42097.1
HL_4V88_1801/A5/3068:3073Ribsomal LSU H95
Not in a motif group		homologous
HL_5TBW_066
HL_46680.1
HL_4V88_1811/A5/3110:3124No text annotation
Not in a motif group		homologous
HL_5TBW_067
HL_56677.7
HL_4V88_1821/A5/3194:3197No text annotation
Not in a motif group		homologous
HL_5TBW_068
HL_98426.1
HL_4V88_1831/A5/3240:3247No text annotation
Not in a motif group		homologous
HL_5TBW_069
HL_14449.2
HL_4V88_1841/A5/3303:3311No text annotation
Not in a motif group		homologous
HL_5TBW_070
HL_27930.1
HL_4V88_1851/A5/3350:3353No text annotation
Not in a motif group		geometric
HL_4V88_192
HL_53837.1
HL_4V88_1861/A6/7:17No text annotation
HL_89881.2
HL_4V88_1871/A6/70:81No text annotation
HL_40069.1
HL_4V88_1881/A6/154:160Other HL
HL_76539.2
HL_4V88_1891/A6/190:195No text annotation
HL_77805.2
HL_4V88_1901/A6/230:235No text annotation
HL_91058.1
HL_4V88_1911/A6/243:250T-loop with 1 bulged base
HL_27930.1
HL_4V88_1921/A6/276:279No text annotation
HL_53837.1
HL_4V88_1931/A6/330:338No text annotation
HL_69023.2
HL_4V88_1941/A6/368:373No text annotation
HL_50142.2
HL_4V88_1951/A6/393:404No text annotation
HL_84288.1
HL_4V88_1961/A6/414:419UNCG
HL_03562.2
HL_4V88_1971/A6/450:456No text annotation
HL_09136.1
HL_4V88_1981/A6/491:496No text annotation
HL_56691.2
HL_4V88_1991/A6/520:532No text annotation
HL_06285.2
HL_4V88_2001/A6/569:574Other HL
HL_53845.1
HL_4V88_2021/A6/716:722No text annotation
HL_90574.1
HL_4V88_2031/A6/764:772No text annotation
HL_46766.2
HL_4V88_2041/A6/777:783No text annotation
HL_97896.2
HL_4V88_2051/A6/829:843No text annotation
HL_96598.1
HL_4V88_2061/A6/900:909No text annotation
HL_12326.1
HL_4V88_2071/A6/937:942Other HL
HL_87030.2
HL_4V88_2081/A6/997:1007No text annotation
HL_12326.1
HL_4V88_2091/A6/1055:1064No text annotation
HL_32255.1
HL_4V88_2101/A6/1084:1089Other HL
HL_42097.1
HL_4V88_2111/A6/1121:1126GNRA
HL_42097.1
HL_4V88_2121/A6/1188:1197No text annotation
HL_73530.2
HL_4V88_2131/A6/1238:1247No text annotation
HL_53597.2
HL_4V88_2141/A6/1296:1301GNRA
HL_42097.1
HL_4V88_2151/A6/1309:1316No text annotation
HL_71554.2
HL_4V88_2161/A6/1359:1364No text annotation
HL_10278.1
HL_4V88_2171/A6/1396:1402No text annotation
HL_42097.1
HL_4V88_2181/A6/1501:1506GNRA
HL_42097.1
HL_4V88_2191/A6/1550:1561No text annotation
HL_22554.1
HL_4V88_2201/A6/1594:1602No text annotation
HL_60812.1
HL_4V88_2211/A6/1691:1710No text annotation
Not in a motif group
HL_4V88_2221/A6/1778:1783Other HL
HL_16173.1
HL_4V88_2231/A7/36:41No text annotation
Not in a motif group		geometric
HL_5TBW_185
HL_87939.1
HL_4V88_2241/A7/88:93GNRA
Not in a motif group		homologous
HL_5TBW_186
HL_42097.1
HL_4V88_2251/A8/69:89No text annotation
Not in a motif group
HL_4V88_2261/A8/108:114No text annotation
Not in a motif group		homologous
HL_5TBW_075
HL_87939.1
HL_4V88_2271/A8/124:129No text annotation
Not in a motif group		homologous
HL_5TBW_076
HL_96851.2

Problematic loops

#loop idProblemSequence
HL_4V88_034No text annotation
HL_4V88_044No text annotation
HL_4V88_052No text annotation
HL_4V88_157No text annotation
HL_4V88_165No text annotation
HL_4V88_201No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_4V88_0021/A1/7:8,
1/A4/150:152		Single bulged C
Not in a motif group		homologous
IL_5TBW_002
IL_61258.12
IL_4V88_0031/A1/13:15,
1/A4/144:145		Single bulged U
Not in a motif group		homologous
IL_5TBW_003
IL_83039.13
IL_4V88_0041/A1/27:28,
1/A1/56:58		Single stack bend
Not in a motif group		homologous
IL_5TBW_004
IL_76488.2
IL_4V88_0051/A1/31:38,
1/A1/45:53		tSH-tHW-tHH-tHS
Not in a motif group		geometric
IL_5TBW_005
IL_35728.2
IL_4V88_0061/A1/82:89,
1/A1/97:103		No text annotation
Not in a motif group		homologous
IL_5TBW_006
IL_88613.1
IL_4V88_0071/A1/123:124,
1/A1/144:149		No text annotation
Not in a motif group		homologous
IL_8C3A_007
IL_19724.2
IL_4V88_0081/A1/125:127,
1/A1/141:143		No text annotation
Not in a motif group		homologous
IL_5TBW_008
IL_95997.1
IL_4V88_0091/A1/163:166,
1/A1/256:258		No text annotation
Not in a motif group
IL_4V88_0101/A1/169:170,
1/A1/248:253		No text annotation
Not in a motif group		homologous
IL_5TBW_010
IL_74684.1
IL_4V88_0111/A1/177:179,
1/A1/237:241		Major groove platform with extra pair
Not in a motif group		homologous
IL_5TBW_011
IL_63450.2
IL_4V88_0121/A1/189:191,
1/A1/204:205		Single bulged U
Not in a motif group		homologous
IL_5TBW_012
IL_83039.13
IL_4V88_0131/A1/337:339,
1/A4/25:26		Single bulged A
Not in a motif group		homologous
IL_5TBW_013
IL_37497.2
IL_4V88_0141/A1/376:379,
1/A1/390:403		No text annotation
Not in a motif group		homologous
IL_5TBW_014
IL_60992.6
IL_4V88_0151/A1/404:410,
1/A4/13:19		Triple sheared with non-canonical cWW
Not in a motif group		homologous
IL_5TBW_015
IL_66414.6
IL_4V88_0161/A1/429:431,
1/A1/628:630		No text annotation
Not in a motif group		homologous
IL_5TBW_016
IL_51629.2
IL_4V88_0181/A1/512:513,
1/A1/577:579		Single bulged A
Not in a motif group		homologous
IL_5TBW_018
IL_37497.2
IL_4V88_0191/A1/517:525,
1/A1/567:573		No text annotation
Not in a motif group		homologous
IL_5TBW_019
IL_23992.1
IL_4V88_0201/A1/531:538,
1/A1/553:561		No text annotation
Not in a motif group		homologous
IL_5TBW_020
IL_07703.1
IL_4V88_0211/A1/668:670,
1/A1/792:794		No text annotation
Not in a motif group		homologous
IL_5TBW_021
IL_95997.1
IL_4V88_0221/A1/680:684,
1/A1/696:700		No text annotation
Not in a motif group		homologous
IL_5TBW_022
IL_74284.1
IL_4V88_0231/A1/725:728,
1/A1/741:745		UAA/GAN
Not in a motif group		homologous
IL_5TBW_023
IL_07235.1
IL_4V88_0241/A1/752:753,
1/A1/779:781		Single bulged A
Not in a motif group		homologous
IL_5TBW_024
IL_37497.2
IL_4V88_0251/A1/755:756,
1/A1/775:777		Single bulged U
Not in a motif group		homologous
IL_5TBW_025
IL_83039.13
IL_4V88_0261/A1/758:763,
1/A1/768:773		No text annotation
Not in a motif group		geometric
IL_5TBW_026
IL_19954.2
IL_4V88_0271/A1/803:805,
1/A1/938:940		No text annotation
Not in a motif group		homologous
IL_5TBW_027
IL_95997.1
IL_4V88_0281/A1/805:809,
1/A1/931:938		No text annotation
Not in a motif group		geometric
IL_5TBW_028
IL_17470.6
IL_4V88_0291/A1/833:834,
1/A1/859:861		Single bulged G
Not in a motif group		geometric
IL_5TBW_029
IL_00225.2
IL_4V88_0301/A1/834:838,
1/A1/855:859		Triple sheared
Not in a motif group		homologous
IL_5TBW_030
IL_56467.8
IL_4V88_0311/A1/869:872,
1/A1/888:890		Major groove platform with extra cWW
Not in a motif group		homologous
IL_5TBW_031
IL_05564.2
IL_4V88_0321/A1/873:875,
1/A1/886:887		Single bulged U
Not in a motif group		homologous
IL_5TBW_032
IL_83039.13
IL_4V88_0331/A1/907:909,
1/A1/919:923		Multiple bulged bases
Not in a motif group		homologous
IL_5TBW_033
IL_90991.6
IL_4V88_0341/A1/954:956,
1/A1/965:967		No text annotation
Not in a motif group		homologous
IL_5TBW_034
IL_95997.1
IL_4V88_0351/A1/969:970,
1/A1/1111:1113		Single stack bend
Not in a motif group		homologous
IL_5TBW_035
IL_76488.2
IL_4V88_0361/A1/977:981,
1/A1/1102:1104		No text annotation
Not in a motif group		homologous
IL_5TBW_036
IL_67474.4
IL_4V88_0371/A1/983:985,
1/A1/1099:1100		Single bulged G
Not in a motif group		homologous
IL_5TBW_037
IL_00225.2
IL_4V88_0381/A1/991:997,
1/A1/1052:1058		7x7 Sarcin-Ricin with intercalated A; G-bulge
Not in a motif group		homologous
IL_5TBW_038
IL_93830.3
IL_4V88_0391/A1/997:998,
1/A1/1050:1052		Minor groove platform
Not in a motif group		geometric
IL_5TBW_039
IL_42622.2
IL_4V88_0401/A1/999:1004,
1/A1/1046:1049		C-loop
Not in a motif group		homologous
IL_5TBW_040
IL_02509.1
IL_4V88_0411/A1/1006:1009,
1/A1/1041:1044		Tandem non-canonical cWW pairs
Not in a motif group		homologous
IL_5TBW_041
IL_30621.2
IL_4V88_0421/A1/1009:1011,
1/A1/1039:1041		No text annotation
Not in a motif group		geometric
IL_5TBW_042
IL_95997.1
IL_4V88_0431/A1/1014:1018,
1/A1/1034:1036		No text annotation
Not in a motif group
IL_4V88_0441/A1/1069:1071,
1/A1/1087:1089		No text annotation
Not in a motif group		homologous
IL_5TBW_044
IL_95997.1
IL_4V88_0451/A1/1074:1076,
1/A1/1083:1084		Single bulged A
Not in a motif group		homologous
IL_5TBW_045
IL_37497.2
IL_4V88_0461/A1/1120:1122,
1/A1/1136:1138		No text annotation
Not in a motif group		homologous
IL_5TBW_046
IL_95997.1
IL_4V88_0471/A1/1123:1125,
1/A1/1133:1135		Isolated cWS basepair
Not in a motif group		homologous
IL_5TBW_047
IL_52767.2
IL_4V88_0481/A1/1167:1171,
1/A1/1328:1332		UAA/GAN
Not in a motif group		homologous
IL_5TBW_048
IL_89002.2
IL_4V88_0491/A1/1173:1180,
1/A1/1325:1326		SSU/LSU pseudoknot
Not in a motif group		homologous
IL_5TBW_049
IL_15861.7
IL_4V88_0501/A1/1180:1182,
1/A1/1324:1325		Single bulged U
Not in a motif group		geometric
IL_5TBW_050
IL_83039.13
IL_4V88_0511/A1/1187:1194,
1/A1/1314:1319		No text annotation
Not in a motif group		geometric
IL_5TBW_051
IL_27086.1
IL_4V88_0521/A1/1194:1205,
1/A1/1299:1314		No text annotation
Not in a motif group		geometric
IL_5TBW_052
IL_53762.1
IL_4V88_0531/A1/1207:1209,
1/A1/1296:1297		Single bulged U
Not in a motif group		homologous
IL_5TBW_053
IL_83039.13
IL_4V88_0541/A1/1218:1226,
1/A1/1283:1287		Kink-turn
Not in a motif group		homologous
IL_5TBW_054
IL_90538.4
IL_4V88_0551/A1/1234:1238,
1/A1/1250:1254		No text annotation
Not in a motif group
IL_4V88_0561/A1/1262:1266,
1/A1/1275:1277		No text annotation
Not in a motif group		homologous
IL_8C3A_059
IL_05564.2
IL_4V88_0571/A1/1376:1378,
1/A1/1428:1431		Isolated cWS basepair
Not in a motif group		homologous
IL_5TBW_057
IL_52767.2
IL_4V88_0581/A1/1385:1387,
1/A1/1420:1421		Single bulged A
Not in a motif group		homologous
IL_5TBW_058
IL_37497.2
IL_4V88_0591/A1/1388:1395,
1/A1/1415:1419		Kink-turn
Not in a motif group		homologous
IL_5TBW_059
IL_70923.2
IL_4V88_0601/A1/1398:1400,
1/A1/1411:1412		Single bulged A
Not in a motif group		homologous
IL_5TBW_060
IL_37497.2
IL_4V88_0611/A1/1444:1450,
1/A1/2354:2359		7x6 Sarcin-Ricin; G-bulge
Not in a motif group		homologous
IL_5TBW_061
IL_76042.2
IL_4V88_0621/A1/1500:1505,
1/A1/1513:1516		No text annotation
Not in a motif group		homologous
IL_5TBW_062
IL_93630.2
IL_4V88_0631/A1/1532:1536,
1/A1/1585:1590		UAA/GAN
Not in a motif group		homologous
IL_5TBW_063
IL_89002.2
IL_4V88_0641/A1/1562:1566,
1/A1/1572:1577		No text annotation
Not in a motif group
IL_4V88_0651/A1/1618:1621,
1/A1/1824:1826		No text annotation
Not in a motif group		homologous
IL_8C3A_070
IL_84698.1
IL_4V88_0661/A1/1623:1626,
1/A1/1817:1822		Multiple bulged bases with near cWW
Not in a motif group		homologous
IL_5TBW_065
IL_58686.2
IL_4V88_0671/A1/1627:1631,
1/A1/1811:1816		No text annotation
Not in a motif group		homologous
IL_5TBW_066
IL_48431.1
IL_4V88_0681/A1/1645:1649,
1/A1/1806:1810		Triple sheared
Not in a motif group		homologous
IL_5TBW_067
IL_56467.8
IL_4V88_0691/A1/1661:1663,
1/A1/1786:1788		No text annotation
Not in a motif group		homologous
IL_5TBW_068
IL_95997.1
IL_4V88_0701/A1/1669:1670,
1/A1/1778:1780		Single bulged C
Not in a motif group		homologous
IL_5TBW_069
IL_61258.12
IL_4V88_0711/A1/1670:1671,
1/A1/1776:1778		Single stack bend
Not in a motif group		geometric
IL_5TBW_070
IL_76488.2
IL_4V88_0721/A1/1694:1698,
1/A1/1747:1752		No text annotation
Not in a motif group		homologous
IL_5TBW_071
IL_69313.1
IL_4V88_0731/A1/1702:1707,
1/A1/1737:1743		No text annotation
Not in a motif group		homologous
IL_5TBW_072
IL_39753.1
IL_4V88_0741/A1/1711:1717,
1/A1/1727:1733		Kink-turn
Not in a motif group		homologous
IL_5TBW_073
IL_60192.2
IL_4V88_0751/A1/1883:1889,
1/A1/2346:2349		No text annotation
Not in a motif group		homologous
IL_5TBW_074
IL_49460.2
IL_4V88_0761/A1/1895:1897,
1/A1/2338:2340		Isolated tWW turn
Not in a motif group		homologous
IL_5TBW_075
IL_54997.7
IL_4V88_0771/A1/1898:1901,
1/A1/2336:2337		Major groove platform; stack outside cWW
Not in a motif group		geometric
IL_5TBW_076
IL_50694.2
IL_4V88_0781/A1/1901:1906,
1/A1/2333:2336		Intercalated tWH
Not in a motif group		homologous
IL_5TBW_077
IL_82842.2
IL_4V88_0791/A1/1918:1923,
1/A1/1928:1934		tSH-tSH-tHH-tHS
Not in a motif group		homologous
IL_5TBW_078
IL_65969.2
IL_4V88_0801/A1/1940:1942,
1/A1/2106:2108		No text annotation
Not in a motif group		homologous
IL_5TBW_079
IL_95997.1
IL_4V88_0811/A1/1947:1948,
1/A1/2098:2101		No text annotation
Not in a motif group		homologous
IL_5TBW_080
IL_74125.1
IL_4V88_0821/A1/1949:1951,
1/A1/2095:2097		No text annotation
Not in a motif group		geometric
IL_5TBW_110
IL_51629.2
IL_4V88_0831/A1/1951:1953,
1/A1/2094:2095		Single stack bend
Not in a motif group		geometric
IL_5TBW_081
IL_76488.2
IL_4V88_0841/A1/2128:2129,
1/A1/2323:2325		Single bulged A
Not in a motif group		homologous
IL_5TBW_082
IL_37497.2
IL_4V88_0851/A1/2156:2161,
1/A1/2173:2180		Kink-turn related
Not in a motif group		homologous
IL_5TBW_083
IL_64509.1
IL_4V88_0861/A1/2196:2199,
1/A1/2245:2246		Major groove outside cWW, minor groove, intercalation pocket
Not in a motif group		homologous
IL_5TBW_084
IL_88739.1
IL_4V88_0871/A1/2200:2201,
1/A1/2241:2244		Major groove outside cWW, minor groove, intercalation pocket
Not in a motif group		homologous
IL_5TBW_085
IL_16396.2
IL_4V88_0881/A1/2204:2206,
1/A1/2237:2238		Single bulged U
Not in a motif group		geometric
IL_5TBW_086
IL_83039.13
IL_4V88_0891/A1/2206:2210,
1/A1/2235:2237		Major groove platform with extra pair
Not in a motif group		homologous
IL_5TBW_087
IL_63450.2
IL_4V88_0901/A1/2211:2217,
1/A1/2228:2234		No text annotation
Not in a motif group		homologous
IL_5TBW_088
IL_36973.6
IL_4V88_0911/A1/2276:2277,
1/A1/2307:2310		Multiple bulged bases
Not in a motif group		geometric
IL_5TBW_089
IL_59677.2
IL_4V88_0921/A1/2277:2288,
1/A1/2304:2307		No text annotation
Not in a motif group		homologous
IL_5TBW_090
IL_81589.2
IL_4V88_0931/A1/2391:2394,
1/A1/2986:2988		Major groove platform with extra pair
Not in a motif group		homologous
IL_5TBW_091
IL_63450.2
IL_4V88_0941/A1/2396:2398,
1/A1/2981:2984		Minor groove platform with intercalation
Not in a motif group		homologous
IL_5TBW_092
IL_54678.5
IL_4V88_0951/A1/2409:2411,
1/A1/2811:2812		Single bulged U
Not in a motif group		homologous
IL_5TBW_093
IL_83039.13
IL_4V88_0961/A1/2412:2413,
1/A1/2807:2810		Minor groove platform
Not in a motif group		homologous
IL_5TBW_094
IL_42622.2
IL_4V88_0971/A1/2423:2425,
1/A1/2604:2607		Isolated tHS basepair with bulges
Not in a motif group		homologous
IL_5TBW_095
IL_38958.7
IL_4V88_0981/A1/2520:2526,
1/A1/2584:2587		No text annotation
Not in a motif group		homologous
IL_5TBW_096
IL_74114.1
IL_4V88_0991/A1/2614:2615,
1/A1/2625:2627		Single bulged A
Not in a motif group		homologous
IL_5TBW_098
IL_37497.2
IL_4V88_1001/A1/2666:2668,
1/A1/2686:2690		Isolated tHS basepair with bulges
Not in a motif group		homologous
IL_5TBW_099
IL_38958.7
IL_4V88_1011/A1/2718:2721,
1/A1/2735:2738		Tandem non-canonical cWW pairs
Not in a motif group		homologous
IL_5TBW_100
IL_30621.2
IL_4V88_1021/A1/2770:2773,
1/A1/2787:2788		Single stack bend with bulge
Not in a motif group		homologous
IL_5TBW_101
IL_76488.2
IL_4V88_1031/A1/2823:2824,
1/A1/2865:2867		Major groove platform
Not in a motif group		homologous
IL_5TBW_102
IL_27635.1
IL_4V88_1041/A1/2824:2826,
1/A1/2863:2865		No text annotation
Not in a motif group		geometric
IL_5TBW_103
IL_95997.1
IL_4V88_1051/A1/2826:2828,
1/A1/2862:2863		Major groove platform
Not in a motif group		geometric
IL_4V9F_083
IL_76223.2
IL_4V88_1061/A1/2828:2830,
1/A1/2858:2862		No text annotation
Not in a motif group		geometric
IL_5TBW_105
IL_92788.2
IL_4V88_1071/A1/2835:2839,
1/A1/2849:2853		Triple sheared
Not in a motif group		homologous
IL_5TBW_106
IL_56467.8
IL_4V88_1081/A1/2876:2877,
1/A1/2949:2951		Major groove platform
Not in a motif group		homologous
IL_5TBW_107
IL_76223.2
IL_4V88_1091/A1/2879:2881,
1/A1/2943:2947		Isolated non-canonical cWW with bulges
Not in a motif group		geometric
IL_5TBW_108
IL_90933.2
IL_4V88_1101/A1/2881:2882,
1/A1/2940:2943		Multiple bulged bases
Not in a motif group		homologous
IL_5TBW_109
IL_71530.2
IL_4V88_1111/A1/2889:2891,
1/A1/2912:2914		No text annotation
Not in a motif group		geometric
IL_5TBW_110
IL_51629.2
IL_4V88_1121/A1/2891:2892,
1/A1/2909:2912		Minor groove platform with intercalation
Not in a motif group		homologous
IL_5TBW_111
IL_95601.3
IL_4V88_1131/A1/2918:2920,
1/A1/2926:2928		No text annotation
Not in a motif group		homologous
IL_5TBW_112
IL_95997.1
IL_4V88_1141/A1/2960:2961,
1/A1/2970:2972		Single bulged A
Not in a motif group		homologous
IL_5TBW_113
IL_37497.2
IL_4V88_1151/A1/3004:3007,
1/A1/3139:3144		Double sheared
Not in a motif group		homologous
IL_5TBW_114
IL_09705.9
IL_4V88_1161/A1/3012:3014,
1/A1/3040:3042		No text annotation
Not in a motif group		homologous
IL_5TBW_115
IL_95997.1
IL_4V88_1171/A1/3018:3025,
1/A1/3030:3036		8x7 Sarcin-Ricin; G-bulge
Not in a motif group		homologous
IL_5TBW_116
IL_04346.7
IL_4V88_1181/A1/3047:3051,
1/A1/3091:3094		Major groove minor groove platform with tHH
Not in a motif group		homologous
IL_5TBW_117
IL_37712.2
IL_4V88_1191/A1/3054:3059,
1/A1/3084:3088		UAA/GAN related
Not in a motif group		homologous
IL_5TBW_118
IL_17136.1
IL_4V88_1201/A1/3063:3064,
1/A1/3077:3080		Multiple bulged bases
Not in a motif group		homologous
IL_5TBW_119
IL_71530.2
IL_4V88_1211/A1/3103:3107,
1/A1/3127:3131		UAA/GAN
Not in a motif group		homologous
IL_5TBW_120
IL_89002.2
IL_4V88_1221/A1/3163:3166,
1/A1/3284:3287		Tandem non-canonical cWW pairs
Not in a motif group		geometric
IL_4WF9_109
IL_30621.2
IL_4V88_1231/A1/3168:3170,
1/A1/3280:3282		No text annotation
Not in a motif group		homologous
IL_5TBW_122
IL_95997.1
IL_4V88_1241/A1/3177:3179,
1/A1/3210:3211		Single bulged A
Not in a motif group		homologous
IL_5TBW_123
IL_37497.2
IL_4V88_1251/A1/3179:3188,
1/A1/3204:3210		No text annotation
Not in a motif group		geometric
IL_5TBW_124
IL_15174.1
IL_4V88_1261/A1/3193:3194,
1/A1/3197:3199		Single bulged U
Not in a motif group		geometric
IL_5TBW_125
IL_83039.13
IL_4V88_1271/A1/3225:3229,
1/A1/3258:3260		No text annotation
Not in a motif group		homologous
IL_5TBW_126
IL_19389.6
IL_4V88_1281/A1/3233:3235,
1/A1/3252:3254		No text annotation
Not in a motif group		homologous
IL_5TBW_127
IL_95997.1
IL_4V88_1291/A1/3235:3238,
1/A1/3249:3252		Tandem non-canonical cWW pairs
Not in a motif group		geometric
IL_6MWN_005
IL_30621.2
IL_4V88_1301/A1/3300:3303,
1/A1/3311:3314		No text annotation
Not in a motif group		homologous
IL_8C3A_135
IL_30621.2
IL_4V88_1311/A1/3318:3320,
1/A1/3387:3388		Single bulged U
Not in a motif group		geometric
IL_5TBW_130
IL_83039.13
IL_4V88_1321/A1/3324:3325,
1/A1/3381:3383		Single bulged U
Not in a motif group		homologous
IL_5TBW_131
IL_83039.13
IL_4V88_1331/A1/3328:3330,
1/A1/3373:3378		Isolated non-canonical cWW with bulges
Not in a motif group		homologous
IL_5TBW_132
IL_90933.2
IL_4V88_1341/A1/3332:3337,
1/A1/3367:3371		No text annotation
Not in a motif group		homologous
IL_5TBW_133
IL_83162.5
IL_4V88_1351/A1/3340:3342,
1/A1/3363:3364		Single bulged U
Not in a motif group		geometric
IL_5TBW_134
IL_83039.13
IL_4V88_1361/A1/3342:3345,
1/A1/3360:3363		tWS-tSW
Not in a motif group		geometric
IL_5TBW_135
IL_09705.9
IL_4V88_1371/A1/3345:3347,
1/A1/3358:3360		UG cWW
Not in a motif group		geometric
IL_4LFB_061
IL_95997.1
IL_4V88_1381/A1/3347:3349,
1/A1/3356:3358		No text annotation
Not in a motif group		geometric
IL_3LA5_001
IL_95997.1
IL_4V88_1391/A1/3349:3350,
1/A1/3353:3356		Multiple bulged bases
Not in a motif group		homologous
IL_5TBW_136
IL_59677.2
IL_4V88_1401/A2/24:26,
1/A2/600:601		Single bulged C
Not in a motif group		homologous
IL_4V88_384
IL_61258.12
IL_4V88_1411/A2/35:37,
1/A2/471:473		UC cWW
Not in a motif group		homologous
IL_4V88_385
IL_51629.2
IL_4V88_1421/A2/37:41,
1/A2/466:471		No text annotation
Not in a motif group		geometric
IL_4V88_386
IL_41507.1
IL_4V88_1431/A2/42:48,
1/A2/431:433		No text annotation
Not in a motif group		homologous
IL_4V88_387
IL_33912.1
IL_4V88_1441/A2/50:52,
1/A2/428:429		Minor groove platform
Not in a motif group		homologous
IL_4V88_388
IL_93353.1
IL_4V88_1451/A2/58:63,
1/A2/87:89		No text annotation
Not in a motif group		homologous
IL_4V88_389
IL_95004.1
IL_4V88_1461/A2/64:69,
1/A2/82:86		No text annotation
Not in a motif group		homologous
IL_4V88_390
IL_77691.1
IL_4V88_1471/A2/109:112,
1/A2/302:305		Tandem non-canonical cWW pairs
Not in a motif group		homologous
IL_4V88_391
IL_30621.2
IL_4V88_1481/A2/113:116,
1/A2/300:301		Multiple bulged bases
Not in a motif group		homologous
IL_4V88_392
IL_44546.1
IL_4V88_1491/A2/117:122,
1/A2/295:299		No text annotation
Not in a motif group		homologous
IL_4V88_393
IL_64181.2
IL_4V88_1501/A2/143:149,
1/A2/165:172		tWH-tWH-tHW-tHW
Not in a motif group		homologous
IL_4V88_394
IL_80604.2
IL_4V88_1511/A2/150:152,
1/A2/162:164		Isolated cWH basepair
Not in a motif group		geometric
IL_6RA4_002
IL_51629.2
IL_4V88_1521/A2/186:189,
1/A2/196:199		Double sheared
Not in a motif group		homologous
IL_4V88_396
IL_09705.9
IL_4V88_1531/A2/204:206,
1/A2/259:263		Major groove platform with extra cWW
Not in a motif group		geometric
IL_4V88_397
IL_05564.2
IL_4V88_1541/A2/206:208,
1/A2/257:259		No text annotation
Not in a motif group		homologous
IL_4V88_398
IL_95997.1
IL_4V88_1561/A2/265:267,
1/A2/288:289		Single bulged A
Not in a motif group		homologous
IL_4V88_399
IL_37497.2
IL_4V88_1571/A2/270:273,
1/A2/283:285		No text annotation
Not in a motif group		homologous
IL_4V88_400
IL_47298.1
IL_4V88_1581/A2/275:276,
1/A2/279:281		Single bulged U
Not in a motif group		homologous
IL_4V88_401
IL_83039.13
IL_4V88_1591/A2/311:316,
1/A2/348:355		Kink-turn with non-sequential stacking
Not in a motif group		homologous
IL_4V88_402
IL_45067.2
IL_4V88_1601/A2/318:323,
1/A2/345:346		No text annotation
Not in a motif group		homologous
IL_4V88_403
IL_48100.2
IL_4V88_1611/A2/363:365,
1/A2/376:381		No text annotation
Not in a motif group		homologous
IL_4V88_404
IL_11347.1
IL_4V88_1621/A2/389:391,
1/A2/406:408		Isolated cWH basepair
Not in a motif group		homologous
IL_4V88_405
IL_51629.2
IL_4V88_1631/A2/411:413,
1/A2/420:422		Isolated near basepair
Not in a motif group		homologous
IL_4V88_406
IL_52767.2
IL_4V88_1641/A2/439:441,
1/A2/463:464		Single bulged U
Not in a motif group		homologous
IL_4V88_407
IL_83039.13
IL_4V88_1651/A2/443:448,
1/A2/458:461		C-loop with extra cWW pair
Not in a motif group		homologous
IL_4V88_408
IL_93630.2
IL_4V88_1661/A2/480:485,
1/A2/502:508		No text annotation
Not in a motif group
IL_4V88_1671/A2/517:520,
1/A2/532:535		Double sheared
Not in a motif group		geometric
IL_4LFB_060
IL_09705.9
IL_4V88_1681/A2/550:557,
1/A2/587:588		SSU/LSU pseudoknot
Not in a motif group		homologous
IL_4V88_413
IL_15861.7
IL_4V88_1691/A2/557:559,
1/A2/586:587		Single bulged U
Not in a motif group		geometric
IL_4V88_414
IL_83039.13
IL_4V88_1701/A2/562:568,
1/A2/575:583		No text annotation
Not in a motif group		homologous
IL_8C3A_425
IL_55871.1
IL_4V88_1711/A2/616:622,
1/A2/1104:1105		No text annotation
Not in a motif group		homologous
IL_4V88_416
IL_69996.1
IL_4V88_1721/A2/624:626,
1/A2/973:975		No text annotation
Not in a motif group		homologous
IL_4V88_417
IL_95997.1
IL_4V88_1731/A2/627:631,
1/A2/968:972		tSH-tHW-tHS
Not in a motif group		homologous
IL_4V88_418
IL_17136.1
IL_4V88_1741/A2/646:648,
1/A2/686:688		No text annotation
Not in a motif group		homologous
IL_4V88_419
IL_95997.1
IL_4V88_1761/A2/652:658,
1/A2/676:682		No text annotation
Not in a motif group
IL_4V88_1781/A2/746:747,
1/A2/802:805		Major groove minor groove platform; mini C-loop
Not in a motif group		homologous
IL_4V88_423
IL_09061.6
IL_4V88_1791/A2/748:750,
1/A2/799:801		No text annotation
Not in a motif group		homologous
IL_4V88_424
IL_95997.1
IL_4V88_1801/A2/751:760,
1/A2/790:798		No text annotation
Not in a motif group
IL_4V88_1811/A2/817:824,
1/A2/848:854		No text annotation
Not in a motif group
IL_4V88_1821/A2/825:827,
1/A2/845:847		Isolated cWH basepair
Not in a motif group		geometric
IL_4KQ0_005
IL_51629.2
IL_4V88_1831/A2/865:866,
1/A2/962:965		Major groove platform; stack outside cWW
Not in a motif group		homologous
IL_4V88_428
IL_50694.2
IL_4V88_1841/A2/867:870,
1/A2/957:961		Tandem non-canonical cWW pairs
Not in a motif group		homologous
IL_4V88_429
IL_30621.2
IL_4V88_1851/A2/871:874,
1/A2/953:956		Tandem non-canonical cWW pairs
Not in a motif group		homologous
IL_4V88_430
IL_30621.2
IL_4V88_1861/A2/874:878,
1/A2/950:953		Tandem non-canonical cWW pairs
Not in a motif group		geometric
IL_4V88_431
IL_30621.2
IL_4V88_1871/A2/885:888,
1/A2/924:927		Tandem non-canonical cWW pairs
Not in a motif group		homologous
IL_4V88_432
IL_30621.2
IL_4V88_1881/A2/893:899,
1/A2/910:919		No text annotation
Not in a motif group		homologous
IL_8C3A_440
IL_22252.1
IL_4V88_1891/A2/985:990,
1/A2/1014:1016		Other IL
Not in a motif group		geometric
IL_4V88_435
IL_22046.1
IL_4V88_1901/A2/990:994,
1/A2/1010:1014		tSH-tHW-tHS
Not in a motif group		homologous
IL_4V88_436
IL_17136.1
IL_4V88_1911/A2/1034:1036,
1/A2/1095:1101		No text annotation
Not in a motif group		homologous
IL_4V88_437
IL_19557.3
IL_4V88_1921/A2/1041:1044,
1/A2/1074:1077		Tandem non-canonical cWW pairs
Not in a motif group		homologous
IL_4V88_438
IL_30621.2
IL_4V88_1931/A2/1051:1053,
1/A2/1066:1067		Single bulged U
Not in a motif group		homologous
IL_4V88_439
IL_83039.13
IL_4V88_1941/A2/1111:1118,
1/A2/1129:1134		8x6 Sarcin-Ricin with inserted Y; G-bulge
Not in a motif group		homologous
IL_4V88_440
IL_24606.2
IL_4V88_1951/A2/1146:1147,
1/A2/1630:1632		Single bulged A
Not in a motif group		homologous
IL_4V88_441
IL_37497.2
IL_4V88_1961/A2/1149:1151,
1/A2/1627:1628		Single bulged G
Not in a motif group		homologous
IL_4V88_442
IL_00225.2
IL_4V88_1971/A2/1157:1160,
1/A2/1617:1621		C-loop
Not in a motif group		homologous
IL_4V88_443
IL_63596.6
IL_4V88_1981/A2/1173:1175,
1/A2/1464:1466		No text annotation
Not in a motif group		homologous
IL_4V88_444
IL_95997.1
IL_4V88_1991/A2/1178:1179,
1/A2/1459:1461		Minor groove platform
Not in a motif group		homologous
IL_4V88_445
IL_42622.2
IL_4V88_2001/A2/1213:1215,
1/A2/1448:1450		No text annotation
Not in a motif group		homologous
IL_4V88_446
IL_95997.1
IL_4V88_2011/A2/1223:1230,
1/A2/1257:1260		No text annotation
Not in a motif group
IL_4V88_2021/A2/1230:1233,
1/A2/1252:1257		No text annotation
Not in a motif group
IL_4V88_2031/A2/1234:1236,
1/A2/1249:1251		No text annotation
Not in a motif group		homologous
IL_4V88_448
IL_10023.1
IL_4V88_2041/A2/1268:1270,
1/A2/1440:1441		Single bulged U
Not in a motif group		homologous
IL_4V88_449
IL_83039.13
IL_4V88_2051/A2/1272:1278,
1/A2/1430:1438		No text annotation
Not in a motif group
IL_4V88_2061/A2/1280:1281,
1/A2/1426:1428		Single bulged A
Not in a motif group		homologous
IL_4V88_452
IL_37497.2
IL_4V88_2071/A2/1290:1292,
1/A2/1323:1325		Isolated cWH basepair
Not in a motif group		homologous
IL_4V88_453
IL_51629.2
IL_4V88_2081/A2/1306:1308,
1/A2/1317:1318		Minor groove platform
Not in a motif group		geometric
IL_5TBW_039
IL_42622.2
IL_4V88_2091/A2/1339:1342,
1/A2/1383:1385		No text annotation
Not in a motif group		homologous
IL_4V88_455
IL_10023.1
IL_4V88_2101/A2/1345:1348,
1/A2/1377:1380		Minor groove platform
Not in a motif group		homologous
IL_4V88_456
IL_76458.1
IL_4V88_2111/A2/1352:1354,
1/A2/1369:1373		No text annotation
Not in a motif group		homologous
IL_4V88_457
IL_95997.1
IL_4V88_2121/A2/1389:1391,
1/A2/1407:1412		Major groove platform; stack outside cWW
Not in a motif group		homologous
IL_4V88_458
IL_58032.1
IL_4V88_2131/A2/1480:1487,
1/A2/1519:1527		No text annotation
Not in a motif group		homologous
IL_4V88_459
IL_10447.1
IL_4V88_2141/A2/1488:1494,
1/A2/1513:1518		No text annotation
Not in a motif group		homologous
IL_4V88_460
IL_75461.4
IL_4V88_2151/A2/1495:1498,
1/A2/1509:1512		Tandem non-canonical cWW pairs
Not in a motif group		homologous
IL_4V88_461
IL_30621.2
IL_4V88_2161/A2/1540:1545,
1/A2/1566:1571		No text annotation
Not in a motif group		homologous
IL_4V88_462
IL_19954.2
IL_4V88_2171/A2/1636:1638,
1/A2/1764:1767		No text annotation
Not in a motif group		geometric
IL_4V88_463
IL_36143.3
IL_4V88_2181/A2/1638:1641,
1/A2/1760:1764		No text annotation
Not in a motif group		homologous
IL_4V88_464
IL_99670.1
IL_4V88_2191/A2/1642:1644,
1/A2/1757:1759		No text annotation
Not in a motif group		geometric
IL_4V88_465
IL_95997.1
IL_4V88_2201/A2/1644:1647,
1/A2/1753:1757		Non canonical cWW and near pair
Not in a motif group		homologous
IL_4V88_466
IL_42334.1
IL_4V88_2211/A2/1650:1652,
1/A2/1748:1750		AA cWW
Not in a motif group		homologous
IL_4V88_467
IL_95997.1
IL_4V88_2221/A2/1653:1656,
1/A2/1744:1747		Double sheared
Not in a motif group		geometric
IL_4V88_468
IL_09705.9
IL_4V88_2231/A2/1656:1658,
1/A2/1743:1744		Single bulged U
Not in a motif group		homologous
IL_4V88_469
IL_83039.13
IL_4V88_2241/A2/1665:1667,
1/A2/1734:1736		No text annotation
Not in a motif group		homologous
IL_4V88_470
IL_51629.2
IL_4V88_2251/A2/1669:1672,
1/A2/1729:1732		Double sheared
Not in a motif group		homologous
IL_4V88_471
IL_09705.9
IL_4V88_2261/A2/1672:1674,
1/A2/1727:1729		No text annotation
Not in a motif group		geometric
IL_4V88_472
IL_95997.1
IL_4V88_2271/A2/1675:1678,
1/A2/1723:1726		Tandem non-canonical cWW pairs
Not in a motif group		homologous
IL_4V88_473
IL_30621.2
IL_4V88_2281/A2/1678:1682,
1/A2/1719:1723		Triple sheared
Not in a motif group		geometric
IL_4V88_474
IL_56467.8
IL_4V88_2291/A2/1683:1685,
1/A2/1716:1718		No text annotation
Not in a motif group		homologous
IL_4V88_475
IL_95997.1
IL_4V88_2301/A2/1687:1690,
1/A2/1711:1714		Tandem non-canonical cWW pairs
Not in a motif group		geometric
IL_1JID_002
IL_30621.2
IL_4V88_2311/A3/15:16,
1/A3/63:65		Single bulged A
Not in a motif group		homologous
IL_5TBW_372
IL_37497.2
IL_4V88_2321/A3/21:27,
1/A3/53:58		No text annotation
Not in a motif group		homologous
IL_5TBW_373
IL_10207.2
IL_4V88_2331/A3/28:29,
1/A3/49:52		Minor groove platform
Not in a motif group		geometric
IL_5TBW_374
IL_63797.2
IL_4V88_2341/A3/29:30,
1/A3/47:49		Single stack bend
Not in a motif group		homologous
IL_5TBW_375
IL_76488.2
IL_4V88_2351/A3/32:36,
1/A3/41:45		Symmetric double minor groove platform
Not in a motif group		homologous
IL_5TBW_376
IL_58103.6
IL_4V88_2361/A3/72:80,
1/A3/100:106		8x7 Sarcin-Ricin; G-bulge
Not in a motif group		homologous
IL_5TBW_377
IL_04346.7
IL_4V88_2371/A3/84:87,
1/A3/94:96		No text annotation
Not in a motif group		homologous
IL_5TBW_378
IL_95997.1
IL_4V88_2381/A4/44:64,
1/A4/96:100		No text annotation
Not in a motif group		geometric
IL_5TBW_144
IL_44998.1
IL_4V88_2391/A4/64:66,
1/A4/93:96		Isolated non-canonical cWW with bulges
Not in a motif group		geometric
IL_5TBW_145
IL_82068.2
IL_4V88_2401/A4/68:69,
1/A4/89:91		Single bulged U
Not in a motif group		homologous
IL_5TBW_146
IL_83039.13
IL_4V88_2411/A4/69:73,
1/A4/78:89		No text annotation
Not in a motif group		geometric
IL_5TBW_147
IL_39287.1
IL_4V88_2431/A5/7:8,
1/A8/150:152		No text annotation
Not in a motif group		homologous
IL_8C3A_002
IL_61258.12
IL_4V88_2441/A5/13:15,
1/A8/144:145		No text annotation
Not in a motif group		homologous
IL_8C3A_003
IL_83039.13
IL_4V88_2451/A5/27:28,
1/A5/56:58		Single stack bend
Not in a motif group		homologous
IL_5TBW_004
IL_76488.2
IL_4V88_2461/A5/31:38,
1/A5/45:53		No text annotation
Not in a motif group		homologous
IL_8C3A_005
IL_35728.2
IL_4V88_2471/A5/82:89,
1/A5/97:103		No text annotation
Not in a motif group		homologous
IL_5TBW_006
IL_88613.1
IL_4V88_2481/A5/123:124,
1/A5/144:149		No text annotation
Not in a motif group		geometric
IL_5TBW_007
IL_19724.2
IL_4V88_2491/A5/125:127,
1/A5/141:143		No text annotation
Not in a motif group		homologous
IL_8C3A_008
IL_95997.1
IL_4V88_2501/A5/163:165,
1/A5/257:258		Single stack bend
Not in a motif group		homologous
IL_5TBW_009
IL_76488.2
IL_4V88_2521/A5/169:174,
1/A5/244:253		No text annotation
Not in a motif group
IL_4V88_2531/A5/177:179,
1/A5/237:241		Major groove platform with extra pair
Not in a motif group		homologous
IL_5TBW_011
IL_63450.2
IL_4V88_2541/A5/189:191,
1/A5/204:205		Single bulged U
Not in a motif group		homologous
IL_5TBW_012
IL_83039.13
IL_4V88_2551/A5/337:339,
1/A8/25:26		Single bulged A
Not in a motif group		homologous
IL_5TBW_013
IL_37497.2
IL_4V88_2561/A5/376:379,
1/A5/390:403		No text annotation
Not in a motif group		homologous
IL_5TBW_014
IL_60992.6
IL_4V88_2571/A5/404:410,
1/A8/13:19		Triple sheared with non-canonical cWW
Not in a motif group		homologous
IL_5TBW_015
IL_66414.6
IL_4V88_2581/A5/429:431,
1/A5/628:630		No text annotation
Not in a motif group		homologous
IL_5TBW_016
IL_51629.2
IL_4V88_2601/A5/512:513,
1/A5/577:579		Single bulged A
Not in a motif group		homologous
IL_5TBW_018
IL_37497.2
IL_4V88_2611/A5/517:525,
1/A5/567:573		No text annotation
Not in a motif group		homologous
IL_5TBW_019
IL_23992.1
IL_4V88_2621/A5/531:538,
1/A5/553:561		No text annotation
Not in a motif group		homologous
IL_5TBW_020
IL_07703.1
IL_4V88_2631/A5/668:670,
1/A5/792:794		No text annotation
Not in a motif group		homologous
IL_5TBW_021
IL_95997.1
IL_4V88_2641/A5/680:684,
1/A5/696:700		No text annotation
Not in a motif group		homologous
IL_5TBW_022
IL_74284.1
IL_4V88_2651/A5/725:728,
1/A5/741:745		UAA/GAN
Not in a motif group		homologous
IL_5TBW_023
IL_07235.1
IL_4V88_2661/A5/752:753,
1/A5/779:781		Single bulged A
Not in a motif group		homologous
IL_5TBW_024
IL_37497.2
IL_4V88_2671/A5/755:756,
1/A5/775:777		Single bulged U
Not in a motif group		homologous
IL_5TBW_025
IL_83039.13
IL_4V88_2681/A5/758:763,
1/A5/768:773		No text annotation
Not in a motif group		homologous
IL_5TBW_026
IL_19954.2
IL_4V88_2691/A5/803:805,
1/A5/938:940		No text annotation
Not in a motif group		homologous
IL_5TBW_027
IL_95997.1
IL_4V88_2701/A5/805:809,
1/A5/931:938		No text annotation
Not in a motif group		geometric
IL_5TBW_028
IL_17470.6
IL_4V88_2711/A5/828:829,
1/A5/895:897		Single bulged A
Not in a motif group		geometric
IL_5J7L_261
IL_37497.2
IL_4V88_2721/A5/833:834,
1/A5/859:861		Single bulged G
Not in a motif group		homologous
IL_5TBW_029
IL_00225.2
IL_4V88_2731/A5/834:838,
1/A5/855:859		No text annotation
Not in a motif group		homologous
IL_8C3A_033
IL_56467.8
IL_4V88_2741/A5/869:872,
1/A5/888:890		Major groove platform with extra cWW
Not in a motif group		homologous
IL_5TBW_031
IL_05564.2
IL_4V88_2751/A5/873:875,
1/A5/886:887		Single bulged U
Not in a motif group		homologous
IL_5TBW_032
IL_83039.13
IL_4V88_2761/A5/907:909,
1/A5/919:923		Multiple bulged bases
Not in a motif group		geometric
IL_5TBW_033
IL_90991.6
IL_4V88_2771/A5/954:956,
1/A5/965:967		No text annotation
Not in a motif group		homologous
IL_5TBW_034
IL_95997.1
IL_4V88_2781/A5/969:970,
1/A5/1111:1113		Single stack bend
Not in a motif group		homologous
IL_5TBW_035
IL_76488.2
IL_4V88_2791/A5/977:982,
1/A5/1101:1104		No text annotation
Not in a motif group		homologous
IL_8C3A_039
IL_59027.1
IL_4V88_2801/A5/983:985,
1/A5/1099:1100		Single bulged G
Not in a motif group		homologous
IL_5TBW_037
IL_00225.2
IL_4V88_2811/A5/991:997,
1/A5/1052:1058		7x7 Sarcin-Ricin with intercalated A; G-bulge
Not in a motif group		geometric
IL_5TBW_038
IL_93830.3
IL_4V88_2821/A5/997:998,
1/A5/1050:1052		Minor groove platform
Not in a motif group		homologous
IL_5TBW_039
IL_42622.2
IL_4V88_2831/A5/999:1004,
1/A5/1046:1049		C-loop
Not in a motif group		homologous
IL_5TBW_040
IL_02509.1
IL_4V88_2841/A5/1006:1009,
1/A5/1041:1044		Tandem non-canonical cWW pairs
Not in a motif group		geometric
IL_5TBW_041
IL_30621.2
IL_4V88_2851/A5/1009:1011,
1/A5/1039:1041		No text annotation
Not in a motif group		homologous
IL_5TBW_042
IL_95997.1
IL_4V88_2861/A5/1013:1015,
1/A5/1035:1037		No text annotation
Not in a motif group		geometric
IL_4KR9_002
IL_51629.2
IL_4V88_2871/A5/1015:1018,
1/A5/1034:1035		Multiple bulged bases
Not in a motif group		geometric
IL_4LFB_005
IL_76389.1
IL_4V88_2881/A5/1018:1020,
1/A5/1032:1034		No text annotation
Not in a motif group		geometric
IL_5UNE_004
IL_95997.1
IL_4V88_2901/A5/1069:1071,
1/A5/1087:1089		No text annotation
Not in a motif group		homologous
IL_8C3A_047
IL_95997.1
IL_4V88_2911/A5/1074:1076,
1/A5/1083:1084		Single bulged A
Not in a motif group		homologous
IL_5TBW_045
IL_37497.2
IL_4V88_2921/A5/1120:1122,
1/A5/1136:1138		No text annotation
Not in a motif group		homologous
IL_5TBW_046
IL_95997.1
IL_4V88_2931/A5/1123:1125,
1/A5/1133:1135		No text annotation
Not in a motif group		homologous
IL_8C3A_050
IL_52767.2
IL_4V88_2941/A5/1167:1171,
1/A5/1328:1332		UAA/GAN
Not in a motif group		homologous
IL_5TBW_048
IL_89002.2
IL_4V88_2951/A5/1173:1180,
1/A5/1325:1326		SSU/LSU pseudoknot
Not in a motif group		homologous
IL_5TBW_049
IL_15861.7
IL_4V88_2961/A5/1180:1182,
1/A5/1324:1325		Single bulged U
Not in a motif group		geometric
IL_5TBW_050
IL_83039.13
IL_4V88_2971/A5/1187:1194,
1/A5/1314:1319		No text annotation
Not in a motif group		homologous
IL_5TBW_051
IL_27086.1
IL_4V88_2981/A5/1194:1205,
1/A5/1299:1314		No text annotation
Not in a motif group		geometric
IL_5TBW_052
IL_53762.1
IL_4V88_2991/A5/1207:1209,
1/A5/1296:1297		Single bulged U
Not in a motif group		homologous
IL_5TBW_053
IL_83039.13
IL_4V88_3001/A5/1218:1226,
1/A5/1283:1287		No text annotation
Not in a motif group		homologous
IL_8C3A_057
IL_90538.4
IL_4V88_3011/A5/1234:1238,
1/A5/1250:1254		No text annotation
Not in a motif group		homologous
IL_8C3A_058
IL_30542.3
IL_4V88_3021/A5/1262:1266,
1/A5/1275:1277		No text annotation
Not in a motif group		homologous
IL_8C3A_059
IL_05564.2
IL_4V88_3031/A5/1376:1378,
1/A5/1428:1431		Isolated cWS basepair
Not in a motif group		homologous
IL_5TBW_057
IL_52767.2
IL_4V88_3041/A5/1385:1387,
1/A5/1420:1421		Single bulged A
Not in a motif group		homologous
IL_5TBW_058
IL_37497.2
IL_4V88_3051/A5/1388:1395,
1/A5/1415:1419		Kink-turn
Not in a motif group		homologous
IL_5TBW_059
IL_70923.2
IL_4V88_3061/A5/1398:1400,
1/A5/1411:1412		Single bulged A
Not in a motif group		homologous
IL_5TBW_060
IL_37497.2
IL_4V88_3071/A5/1444:1450,
1/A5/2354:2359		7x6 Sarcin-Ricin; G-bulge
Not in a motif group		homologous
IL_5TBW_061
IL_76042.2
IL_4V88_3081/A5/1492:1495,
1/A5/1835:1836		Major groove platform; stack outside cWW
Not in a motif group		geometric
IL_4V9F_050
IL_50694.2
IL_4V88_3091/A5/1500:1505,
1/A5/1513:1516		No text annotation
Not in a motif group		homologous
IL_5TBW_062
IL_93630.2
IL_4V88_3101/A5/1532:1536,
1/A5/1585:1590		UAA/GAN
Not in a motif group		homologous
IL_5TBW_063
IL_89002.2
IL_4V88_3121/A5/1618:1621,
1/A5/1824:1826		No text annotation
Not in a motif group		homologous
IL_8C3A_070
IL_84698.1
IL_4V88_3131/A5/1623:1625,
1/A5/1818:1822		Isolated non-canonical cWW with bulges
Not in a motif group		geometric
IL_5TBW_145
IL_82068.2
IL_4V88_3141/A5/1625:1627,
1/A5/1816:1818		No text annotation
Not in a motif group		geometric
IL_7A0S_031
IL_95997.1
IL_4V88_3151/A5/1627:1631,
1/A5/1811:1816		No text annotation
Not in a motif group		homologous
IL_5TBW_066
IL_48431.1
IL_4V88_3161/A5/1645:1649,
1/A5/1806:1810		Triple sheared
Not in a motif group		homologous
IL_5TBW_067
IL_56467.8
IL_4V88_3171/A5/1661:1663,
1/A5/1786:1788		No text annotation
Not in a motif group		homologous
IL_5TBW_068
IL_95997.1
IL_4V88_3181/A5/1669:1670,
1/A5/1778:1780		Single bulged C
Not in a motif group		homologous
IL_5TBW_069
IL_61258.12
IL_4V88_3191/A5/1670:1671,
1/A5/1776:1778		Single stack bend
Not in a motif group		geometric
IL_5TBW_070
IL_76488.2
IL_4V88_3201/A5/1694:1698,
1/A5/1747:1752		No text annotation
Not in a motif group		homologous
IL_5TBW_071
IL_69313.1
IL_4V88_3211/A5/1702:1707,
1/A5/1737:1743		No text annotation
Not in a motif group		homologous
IL_8C3A_078
IL_39753.1
IL_4V88_3221/A5/1711:1717,
1/A5/1727:1733		Kink-turn
Not in a motif group		homologous
IL_5TBW_073
IL_60192.2
IL_4V88_3231/A5/1883:1889,
1/A5/2346:2349		No text annotation
Not in a motif group		homologous
IL_5TBW_074
IL_49460.2
IL_4V88_3241/A5/1895:1897,
1/A5/2338:2340		Isolated tWW turn
Not in a motif group		homologous
IL_5TBW_075
IL_54997.7
IL_4V88_3251/A5/1898:1901,
1/A5/2336:2337		Major groove platform; stack outside cWW
Not in a motif group		homologous
IL_5TBW_076
IL_50694.2
IL_4V88_3261/A5/1901:1906,
1/A5/2333:2336		Intercalated tWH
Not in a motif group		geometric
IL_5TBW_077
IL_82842.2
IL_4V88_3271/A5/1918:1923,
1/A5/1928:1934		No text annotation
Not in a motif group		homologous
IL_8C3A_084
IL_65969.2
IL_4V88_3281/A5/1940:1942,
1/A5/2106:2108		No text annotation
Not in a motif group		homologous
IL_5TBW_079
IL_95997.1
IL_4V88_3291/A5/1947:1948,
1/A5/2098:2101		No text annotation
Not in a motif group		homologous
IL_8C3A_086
IL_74125.1
IL_4V88_3301/A5/2128:2129,
1/A5/2323:2325		Single bulged A
Not in a motif group		homologous
IL_5TBW_082
IL_37497.2
IL_4V88_3311/A5/2156:2161,
1/A5/2173:2180		Kink-turn related
Not in a motif group		homologous
IL_5TBW_083
IL_64509.1
IL_4V88_3321/A5/2196:2199,
1/A5/2245:2246		Major groove outside cWW, minor groove, intercalation pocket
Not in a motif group		homologous
IL_5TBW_084
IL_88739.1
IL_4V88_3331/A5/2200:2201,
1/A5/2241:2244		No text annotation
Not in a motif group		homologous
IL_8C3A_090
IL_16396.2
IL_4V88_3341/A5/2204:2206,
1/A5/2237:2238		Single bulged U
Not in a motif group		homologous
IL_5TBW_086
IL_83039.13
IL_4V88_3351/A5/2276:2277,
1/A5/2307:2310		Multiple bulged bases
Not in a motif group		homologous
IL_5TBW_089
IL_59677.2
IL_4V88_3361/A5/2277:2288,
1/A5/2304:2307		No text annotation
Not in a motif group		geometric
IL_5TBW_090
IL_81589.2
IL_4V88_3371/A5/2391:2394,
1/A5/2986:2988		Major groove platform with extra pair
Not in a motif group		homologous
IL_5TBW_091
IL_63450.2
IL_4V88_3381/A5/2396:2398,
1/A5/2981:2984		Minor groove platform with intercalation
Not in a motif group		homologous
IL_5TBW_092
IL_54678.5
IL_4V88_3391/A5/2409:2411,
1/A5/2811:2812		Single bulged U
Not in a motif group		homologous
IL_5TBW_093
IL_83039.13
IL_4V88_3401/A5/2412:2413,
1/A5/2807:2810		Minor groove platform
Not in a motif group		homologous
IL_5TBW_094
IL_42622.2
IL_4V88_3411/A5/2423:2425,
1/A5/2604:2607		Isolated tHS basepair with bulges
Not in a motif group		homologous
IL_5TBW_095
IL_38958.7
IL_4V88_3421/A5/2520:2526,
1/A5/2584:2587		No text annotation
Not in a motif group		homologous
IL_5TBW_096
IL_74114.1
IL_4V88_3441/A5/2614:2615,
1/A5/2625:2627		No text annotation
Not in a motif group		homologous
IL_8C3A_107
IL_69996.1
IL_4V88_3451/A5/2666:2668,
1/A5/2686:2690		Isolated tHS basepair with bulges
Not in a motif group		homologous
IL_5TBW_099
IL_38958.7
IL_4V88_3461/A5/2714:2716,
1/A5/2740:2741		Single bulged A
Not in a motif group		geometric
IL_5WWT_001
IL_37497.2
IL_4V88_3471/A5/2718:2721,
1/A5/2735:2738		Tandem non-canonical cWW pairs
Not in a motif group		homologous
IL_5TBW_100
IL_30621.2
IL_4V88_3481/A5/2770:2773,
1/A5/2787:2788		Single stack bend with bulge
Not in a motif group		homologous
IL_5TBW_101
IL_76488.2
IL_4V88_3491/A5/2823:2824,
1/A5/2865:2867		Major groove platform
Not in a motif group		homologous
IL_5TBW_102
IL_27635.1
IL_4V88_3501/A5/2824:2826,
1/A5/2863:2865		No text annotation
Not in a motif group		geometric
IL_5TBW_103
IL_95997.1
IL_4V88_3511/A5/2826:2828,
1/A5/2862:2863		Major groove platform
Not in a motif group		homologous
IL_5TBW_104
IL_76223.2
IL_4V88_3521/A5/2828:2830,
1/A5/2858:2862		No text annotation
Not in a motif group		geometric
IL_5TBW_105
IL_92788.2
IL_4V88_3531/A5/2835:2839,
1/A5/2849:2853		Triple sheared
Not in a motif group		homologous
IL_5TBW_106
IL_56467.8
IL_4V88_3541/A5/2876:2877,
1/A5/2949:2951		Major groove platform
Not in a motif group		homologous
IL_5TBW_107
IL_76223.2
IL_4V88_3551/A5/2879:2881,
1/A5/2943:2947		Isolated non-canonical cWW with bulges
Not in a motif group		homologous
IL_5TBW_108
IL_90933.2
IL_4V88_3561/A5/2881:2882,
1/A5/2940:2943		Multiple bulged bases
Not in a motif group		geometric
IL_5TBW_109
IL_71530.2
IL_4V88_3571/A5/2889:2891,
1/A5/2912:2914		No text annotation
Not in a motif group		homologous
IL_5TBW_110
IL_51629.2
IL_4V88_3581/A5/2891:2892,
1/A5/2909:2912		Minor groove platform with intercalation
Not in a motif group		geometric
IL_5TBW_111
IL_95601.3
IL_4V88_3591/A5/2918:2920,
1/A5/2926:2928		No text annotation
Not in a motif group		geometric
IL_5TBW_112
IL_95997.1
IL_4V88_3601/A5/2960:2961,
1/A5/2970:2972		Single bulged A
Not in a motif group		homologous
IL_5TBW_113
IL_37497.2
IL_4V88_3611/A5/3004:3007,
1/A5/3139:3144		Double sheared
Not in a motif group		homologous
IL_5TBW_114
IL_09705.9
IL_4V88_3621/A5/3012:3014,
1/A5/3040:3042		No text annotation
Not in a motif group		homologous
IL_8C3A_124
IL_95997.1
IL_4V88_3631/A5/3018:3025,
1/A5/3030:3036		8x7 Sarcin-Ricin; G-bulge
Not in a motif group		geometric
IL_5TBW_116
IL_04346.7
IL_4V88_3641/A5/3047:3051,
1/A5/3091:3094		Major groove minor groove platform with tHH
Not in a motif group		homologous
IL_5TBW_117
IL_37712.2
IL_4V88_3651/A5/3054:3059,
1/A5/3084:3088		UAA/GAN related
Not in a motif group		homologous
IL_5TBW_118
IL_17136.1
IL_4V88_3661/A5/3063:3064,
1/A5/3077:3080		Multiple bulged bases
Not in a motif group		homologous
IL_5TBW_119
IL_71530.2
IL_4V88_3671/A5/3103:3107,
1/A5/3127:3131		UAA/GAN
Not in a motif group		homologous
IL_5TBW_120
IL_89002.2
IL_4V88_3681/A5/3161:3166,
1/A5/3284:3289		No text annotation
Not in a motif group		geometric
IL_6O5F_001
IL_04668.1
IL_4V88_3691/A5/3168:3170,
1/A5/3280:3282		No text annotation
Not in a motif group		homologous
IL_5TBW_122
IL_95997.1
IL_4V88_3701/A5/3177:3179,
1/A5/3210:3211		Single bulged A
Not in a motif group		geometric
IL_5TBW_123
IL_37497.2
IL_4V88_3711/A5/3179:3188,
1/A5/3204:3210		No text annotation
Not in a motif group		homologous
IL_5TBW_124
IL_15174.1
IL_4V88_3721/A5/3193:3194,
1/A5/3197:3199		Single bulged U
Not in a motif group		geometric
IL_5TBW_125
IL_83039.13
IL_4V88_3731/A5/3225:3229,
1/A5/3258:3260		No text annotation
Not in a motif group		homologous
IL_8C3A_133
IL_19389.6
IL_4V88_3741/A5/3233:3235,
1/A5/3252:3254		No text annotation
Not in a motif group		geometric
IL_5TBW_042
IL_95997.1
IL_4V88_3751/A5/3235:3238,
1/A5/3249:3252		Tandem non-canonical cWW pairs
Not in a motif group		homologous
IL_5TBW_128
IL_30621.2
IL_4V88_3761/A5/3300:3303,
1/A5/3311:3314		Tandem non-canonical cWW pairs
Not in a motif group		geometric
IL_5TBW_129
IL_30621.2
IL_4V88_3771/A5/3318:3320,
1/A5/3387:3388		No text annotation
Not in a motif group		homologous
IL_8C3A_136
IL_83039.13
IL_4V88_3781/A5/3324:3325,
1/A5/3381:3383		Single bulged U
Not in a motif group		homologous
IL_5TBW_131
IL_83039.13
IL_4V88_3791/A5/3328:3330,
1/A5/3373:3378		Isolated non-canonical cWW with bulges
Not in a motif group		homologous
IL_5TBW_132
IL_90933.2
IL_4V88_3801/A5/3332:3337,
1/A5/3367:3371		No text annotation
Not in a motif group		homologous
IL_5TBW_133
IL_83162.5
IL_4V88_3811/A5/3340:3342,
1/A5/3363:3364		No text annotation
Not in a motif group		homologous
IL_8C3A_140
IL_83039.13
IL_4V88_3821/A5/3342:3345,
1/A5/3360:3363		No text annotation
Not in a motif group		homologous
IL_8C3A_141
IL_09705.9
IL_4V88_3831/A5/3349:3350,
1/A5/3353:3356		No text annotation
Not in a motif group		homologous
IL_8C3A_142
IL_59677.2
IL_4V88_3841/A6/24:26,
1/A6/600:601		Single bulged C
IL_61258.12
IL_4V88_3851/A6/35:37,
1/A6/471:473		UC cWW
IL_51629.2
IL_4V88_3861/A6/37:41,
1/A6/466:471		No text annotation
IL_41507.1
IL_4V88_3871/A6/42:48,
1/A6/431:433		No text annotation
IL_33912.1
IL_4V88_3881/A6/50:52,
1/A6/428:429		Minor groove platform
IL_93353.1
IL_4V88_3891/A6/58:63,
1/A6/87:89		No text annotation
IL_95004.1
IL_4V88_3901/A6/64:69,
1/A6/82:86		No text annotation
IL_77691.1
IL_4V88_3911/A6/109:112,
1/A6/302:305		Tandem non-canonical cWW pairs
IL_30621.2
IL_4V88_3921/A6/113:116,
1/A6/300:301		Multiple bulged bases
IL_44546.1
IL_4V88_3931/A6/117:122,
1/A6/295:299		No text annotation
IL_64181.2
IL_4V88_3941/A6/143:149,
1/A6/165:172		tWH-tWH-tHW-tHW
IL_80604.2
IL_4V88_3951/A6/150:152,
1/A6/162:164		No text annotation
IL_53251.2
IL_4V88_3961/A6/186:189,
1/A6/196:199		Double sheared
IL_09705.9
IL_4V88_3971/A6/204:206,
1/A6/259:263		Major groove platform with extra cWW
IL_05564.2
IL_4V88_3981/A6/206:208,
1/A6/257:259		No text annotation
IL_95997.1
IL_4V88_3991/A6/265:267,
1/A6/288:289		Single bulged A
IL_37497.2
IL_4V88_4001/A6/270:273,
1/A6/283:285		No text annotation
IL_47298.1
IL_4V88_4011/A6/275:276,
1/A6/279:281		Single bulged U
IL_83039.13
IL_4V88_4021/A6/311:316,
1/A6/348:355		Kink-turn with non-sequential stacking
IL_45067.2
IL_4V88_4031/A6/318:323,
1/A6/345:346		No text annotation
IL_48100.2
IL_4V88_4041/A6/363:365,
1/A6/376:381		No text annotation
IL_11347.1
IL_4V88_4051/A6/389:391,
1/A6/406:408		Isolated cWH basepair
IL_51629.2
IL_4V88_4061/A6/411:413,
1/A6/420:422		Isolated near basepair
IL_52767.2
IL_4V88_4071/A6/439:441,
1/A6/463:464		Single bulged U
IL_83039.13
IL_4V88_4081/A6/443:448,
1/A6/458:461		C-loop with extra cWW pair
IL_93630.2
IL_4V88_4091/A6/481:482,
1/A6/505:507		Single bulged A
IL_37497.2
IL_4V88_4101/A6/484:491,
1/A6/496:503		No text annotation
IL_80604.2
IL_4V88_4111/A6/516:518,
1/A6/533:536		Minor groove platform with extra cWW
IL_46796.1
IL_4V88_4121/A6/518:520,
1/A6/532:533		Minor groove platform
IL_93353.1
IL_4V88_4131/A6/550:557,
1/A6/587:588		SSU/LSU pseudoknot
IL_15861.7
IL_4V88_4141/A6/557:559,
1/A6/586:587		Single bulged U
IL_83039.13
IL_4V88_4151/A6/562:568,
1/A6/575:583		No text annotation
IL_55871.1
IL_4V88_4161/A6/616:622,
1/A6/1104:1105		No text annotation
IL_69996.1
IL_4V88_4171/A6/624:626,
1/A6/973:975		No text annotation
IL_95997.1
IL_4V88_4181/A6/627:631,
1/A6/968:972		tSH-tHW-tHS
IL_17136.1
IL_4V88_4191/A6/646:648,
1/A6/686:688		No text annotation
IL_95997.1
IL_4V88_4201/A6/649:653,
1/A6/677:685		No text annotation
IL_97253.1
IL_4V88_4211/A6/703:708,
1/A6/730:735		No text annotation
IL_86929.2
IL_4V88_4221/A6/708:712,
1/A6/726:730		No text annotation
IL_05145.2
IL_4V88_4231/A6/746:747,
1/A6/802:805		Major groove minor groove platform; mini C-loop
IL_09061.6
IL_4V88_4241/A6/748:750,
1/A6/799:801		No text annotation
IL_95997.1
IL_4V88_4251/A6/751:759,
1/A6/791:798		No text annotation
IL_69091.1
IL_4V88_4261/A6/819:822,
1/A6/850:852		No text annotation
IL_95997.1
IL_4V88_4271/A6/822:824,
1/A6/848:850		Isolated cWH basepair
IL_51629.2
IL_4V88_4281/A6/865:866,
1/A6/962:965		Major groove platform; stack outside cWW
IL_50694.2
IL_4V88_4291/A6/867:870,
1/A6/957:961		Tandem non-canonical cWW pairs
IL_30621.2
IL_4V88_4301/A6/871:874,
1/A6/953:956		Tandem non-canonical cWW pairs
IL_30621.2
IL_4V88_4311/A6/874:878,
1/A6/950:953		Tandem non-canonical cWW pairs
IL_30621.2
IL_4V88_4321/A6/885:888,
1/A6/924:927		Tandem non-canonical cWW pairs
IL_30621.2
IL_4V88_4331/A6/893:895,
1/A6/917:919		No text annotation
IL_95997.1
IL_4V88_4341/A6/895:899,
1/A6/910:917		Kink-turn
IL_45067.2
IL_4V88_4351/A6/985:990,
1/A6/1014:1016		Other IL
IL_22046.1
IL_4V88_4361/A6/990:994,
1/A6/1010:1014		tSH-tHW-tHS
IL_17136.1
IL_4V88_4371/A6/1034:1036,
1/A6/1095:1101		No text annotation
IL_19557.3
IL_4V88_4381/A6/1041:1044,
1/A6/1074:1077		Tandem non-canonical cWW pairs
IL_30621.2
IL_4V88_4391/A6/1051:1053,
1/A6/1066:1067		Single bulged U
IL_83039.13
IL_4V88_4401/A6/1111:1118,
1/A6/1129:1134		8x6 Sarcin-Ricin with inserted Y; G-bulge
IL_24606.2
IL_4V88_4411/A6/1146:1147,
1/A6/1630:1632		Single bulged A
IL_37497.2
IL_4V88_4421/A6/1149:1151,
1/A6/1627:1628		Single bulged G
IL_00225.2
IL_4V88_4431/A6/1157:1160,
1/A6/1617:1621		C-loop
IL_63596.6
IL_4V88_4441/A6/1173:1175,
1/A6/1464:1466		No text annotation
IL_95997.1
IL_4V88_4451/A6/1178:1179,
1/A6/1459:1461		Minor groove platform
IL_42622.2
IL_4V88_4461/A6/1213:1215,
1/A6/1448:1450		No text annotation
IL_95997.1
IL_4V88_4471/A6/1224:1233,
1/A6/1252:1259		Kink-turn
IL_34780.1
IL_4V88_4481/A6/1234:1236,
1/A6/1249:1251		No text annotation
IL_10023.1
IL_4V88_4491/A6/1268:1270,
1/A6/1440:1441		Single bulged U
IL_83039.13
IL_4V88_4501/A6/1272:1276,
1/A6/1436:1438		Isolated cWS basepair
IL_76319.2
IL_4V88_4511/A6/1276:1278,
1/A6/1430:1436		Minor groove platform with extra cWW
IL_92788.2
IL_4V88_4521/A6/1280:1281,
1/A6/1426:1428		Single bulged A
IL_37497.2
IL_4V88_4531/A6/1290:1292,
1/A6/1323:1325		Isolated cWH basepair
IL_51629.2
IL_4V88_4541/A6/1306:1308,
1/A6/1317:1318		Minor groove platform
IL_93353.1
IL_4V88_4551/A6/1339:1342,
1/A6/1383:1385		No text annotation
IL_10023.1
IL_4V88_4561/A6/1345:1348,
1/A6/1377:1380		Minor groove platform
IL_76458.1
IL_4V88_4571/A6/1352:1354,
1/A6/1369:1373		No text annotation
IL_95997.1
IL_4V88_4581/A6/1389:1391,
1/A6/1407:1412		Major groove platform; stack outside cWW
IL_58032.1
IL_4V88_4591/A6/1480:1487,
1/A6/1519:1527		No text annotation
IL_10447.1
IL_4V88_4601/A6/1488:1494,
1/A6/1513:1518		No text annotation
IL_75461.4
IL_4V88_4611/A6/1495:1498,
1/A6/1509:1512		Tandem non-canonical cWW pairs
IL_30621.2
IL_4V88_4621/A6/1540:1545,
1/A6/1566:1571		No text annotation
IL_19954.2
IL_4V88_4631/A6/1636:1638,
1/A6/1764:1767		No text annotation
IL_36143.3
IL_4V88_4641/A6/1638:1641,
1/A6/1760:1764		No text annotation
IL_99670.1
IL_4V88_4651/A6/1642:1644,
1/A6/1757:1759		No text annotation
IL_95997.1
IL_4V88_4661/A6/1644:1647,
1/A6/1753:1757		Non canonical cWW and near pair
IL_42334.1
IL_4V88_4671/A6/1650:1652,
1/A6/1748:1750		AA cWW
IL_95997.1
IL_4V88_4681/A6/1653:1656,
1/A6/1744:1747		Double sheared
IL_09705.9
IL_4V88_4691/A6/1656:1658,
1/A6/1743:1744		Single bulged U
IL_83039.13
IL_4V88_4701/A6/1665:1667,
1/A6/1734:1736		No text annotation
IL_51629.2
IL_4V88_4711/A6/1669:1672,
1/A6/1729:1732		Double sheared
IL_09705.9
IL_4V88_4721/A6/1672:1674,
1/A6/1727:1729		No text annotation
IL_95997.1
IL_4V88_4731/A6/1675:1678,
1/A6/1723:1726		Tandem non-canonical cWW pairs
IL_30621.2
IL_4V88_4741/A6/1678:1682,
1/A6/1719:1723		Triple sheared
IL_56467.8
IL_4V88_4751/A6/1684:1686,
1/A6/1715:1717		No text annotation
IL_95997.1
IL_4V88_4761/A6/1688:1690,
1/A6/1711:1713		Other IL
IL_10023.1
IL_4V88_4771/A7/15:16,
1/A7/63:65		Single bulged A
Not in a motif group		homologous
IL_5TBW_372
IL_37497.2
IL_4V88_4781/A7/21:27,
1/A7/53:58		No text annotation
Not in a motif group		homologous
IL_5TBW_373
IL_10207.2
IL_4V88_4791/A7/28:29,
1/A7/49:52		Minor groove platform
Not in a motif group		homologous
IL_5TBW_374
IL_63797.2
IL_4V88_4801/A7/29:30,
1/A7/47:49		Single stack bend
Not in a motif group		geometric
IL_5TBW_375
IL_76488.2
IL_4V88_4811/A7/32:36,
1/A7/41:45		Symmetric double minor groove platform
Not in a motif group		homologous
IL_5TBW_376
IL_58103.6
IL_4V88_4821/A7/72:80,
1/A7/100:106		8x7 Sarcin-Ricin; G-bulge
Not in a motif group		homologous
IL_5TBW_377
IL_04346.7
IL_4V88_4831/A7/84:87,
1/A7/94:96		No text annotation
Not in a motif group		homologous
IL_5TBW_378
IL_95997.1
IL_4V88_4841/A8/44:64,
1/A8/96:100		No text annotation
Not in a motif group		geometric
IL_5TBW_144
IL_44998.1
IL_4V88_4851/A8/64:66,
1/A8/93:96		Isolated non-canonical cWW with bulges
Not in a motif group		homologous
IL_5TBW_145
IL_82068.2
IL_4V88_4861/A8/68:69,
1/A8/89:91		Single bulged U
Not in a motif group		homologous
IL_5TBW_146
IL_83039.13

Problematic loops

#loop idProblemSequence
IL_4V88_001No text annotation
IL_4V88_017No text annotation
IL_4V88_155No text annotation
IL_4V88_175No text annotation
IL_4V88_177No text annotation
IL_4V88_242Isolated cWS basepair
IL_4V88_251No text annotation
IL_4V88_259No text annotation
IL_4V88_289Tandem non-canonical cWW pairs
IL_4V88_311Isolated cWH basepair
IL_4V88_343No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_4V88_0011/A1/113:123,
1/A1/149:158,
1/A1/263:267		No text annotation
Not in a motif group
J3_4V88_0021/A1/814:820,
1/A1/905:907,
1/A1/923:926		No text annotation
Not in a motif group		homologous
J3_5TBW_004
NA
J3_4V88_0031/A1/828:831,
1/A1/863:867,
1/A1/892:897		No text annotation
Not in a motif group		homologous
J3_5TBW_005
NA
J3_4V88_0041/A1/1230:1232,
1/A1/1256:1262,
1/A1/1277:1279		No text annotation
Not in a motif group		homologous
J3_5TBW_007
NA
J3_4V88_0051/A1/1479:1485,
1/A1/1857:1859,
1/A1/1871:1874		No text annotation
Not in a motif group		homologous
J3_5TBW_008
NA
J3_4V88_0061/A1/1488:1491,
1/A1/1837:1843,
1/A1/1852:1854		No text annotation
Not in a motif group		homologous
J3_5TBW_009
NA
J3_4V88_0071/A1/2432:2435,
1/A1/2512:2517,
1/A1/2590:2597		No text annotation
Not in a motif group		homologous
J3_5TBW_012
NA
J3_4V88_0081/A1/2664:2666,
1/A1/2690:2692,
1/A1/2701:2706		No text annotation
Not in a motif group		homologous
J3_5TBW_013
NA
J3_4V88_0091/A1/2886:2889,
1/A1/2914:2916,
1/A1/2930:2936		No text annotation
Not in a motif group		homologous
J3_5TBW_014
NA
J3_4V88_0101/A1/3298:3300,
1/A1/3314:3318,
1/A1/3388:3390		No text annotation
Not in a motif group		homologous
J3_5TBW_015
NA
J3_4V88_0111/A2/760:763,
1/A2/773:775,
1/A2/785:790		No text annotation
Not in a motif group		homologous
J3_4V88_032
NA
J3_4V88_0121/A2/881:884,
1/A2/928:936,
1/A2/943:947		No text annotation
Not in a motif group		homologous
J3_4V88_033
NA
J3_4V88_0131/A2/1037:1039,
1/A2/1079:1083,
1/A2/1090:1094		No text annotation
Not in a motif group		homologous
J3_4V88_034
NA
J3_4V88_0141/A2/1161:1164,
1/A2/1581:1587,
1/A2/1609:1616		No text annotation
Not in a motif group		homologous
J3_4V88_035
NA
J3_4V88_0151/A2/1168:1171,
1/A2/1468:1470,
1/A2/1574:1577		No text annotation
Not in a motif group		homologous
J3_4V88_036
NA
J3_4V88_0161/A2/1180:1187,
1/A2/1198:1209,
1/A2/1454:1458		No text annotation
Not in a motif group
J3_4V88_0171/A2/1215:1220,
1/A2/1263:1267,
1/A2/1442:1448		No text annotation
Not in a motif group		homologous
J3_4V88_038
NA
J3_4V88_0181/A2/1283:1288,
1/A2/1327:1332,
1/A2/1419:1424		No text annotation
Not in a motif group		homologous
J3_4V88_039
NA
J3_4V88_0191/A2/1336:1338,
1/A2/1386:1389,
1/A2/1412:1415		No text annotation
Not in a motif group		homologous
J3_4V88_040
NA
J3_4V88_0201/A2/1470:1474,
1/A2/1533:1540,
1/A2/1571:1574		No text annotation
Not in a motif group
J3_4V88_0211/A5/113:123,
1/A5/149:158,
1/A5/263:267		No text annotation
Not in a motif group
J3_4V88_0221/A5/814:820,
1/A5/905:907,
1/A5/923:926		No text annotation
Not in a motif group		homologous
J3_5TBW_004
NA
J3_4V88_0231/A5/829:831,
1/A5/863:867,
1/A5/892:895		No text annotation
Not in a motif group		homologous
J3_8C3A_004
NA
J3_4V88_0241/A5/1230:1232,
1/A5/1256:1262,
1/A5/1277:1279		No text annotation
Not in a motif group		homologous
J3_5TBW_007
NA
J3_4V88_0251/A5/1479:1485,
1/A5/1857:1859,
1/A5/1871:1874		No text annotation
Not in a motif group		homologous
J3_5TBW_008
NA
J3_4V88_0261/A5/1488:1491,
1/A5/1837:1843,
1/A5/1852:1854		No text annotation
Not in a motif group		homologous
J3_5TBW_009
NA
J3_4V88_0271/A5/2432:2435,
1/A5/2512:2517,
1/A5/2590:2597		No text annotation
Not in a motif group		homologous
J3_8C3A_008
NA
J3_4V88_0281/A5/2529:2532,
1/A5/2547:2563,
1/A5/2578:2581		No text annotation
Not in a motif group
J3_4V88_0291/A5/2664:2666,
1/A5/2690:2692,
1/A5/2701:2706		No text annotation
Not in a motif group		homologous
J3_8C3A_010
NA
J3_4V88_0301/A5/2886:2889,
1/A5/2914:2916,
1/A5/2930:2936		No text annotation
Not in a motif group		homologous
J3_5TBW_014
NA
J3_4V88_0311/A5/3298:3300,
1/A5/3314:3318,
1/A5/3388:3390		No text annotation
Not in a motif group		homologous
J3_5TBW_015
NA
J3_4V88_0321/A6/760:763,
1/A6/773:775,
1/A6/785:790		No text annotation
Not in a motif group
J3_4V88_0331/A6/881:884,
1/A6/928:936,
1/A6/943:947		No text annotation
Not in a motif group
J3_4V88_0341/A6/1037:1039,
1/A6/1079:1083,
1/A6/1090:1094		No text annotation
Not in a motif group
J3_4V88_0351/A6/1161:1164,
1/A6/1581:1587,
1/A6/1609:1616		No text annotation
Not in a motif group
J3_4V88_0361/A6/1168:1171,
1/A6/1468:1470,
1/A6/1574:1577		No text annotation
Not in a motif group
J3_4V88_0371/A6/1180:1187,
1/A6/1198:1209,
1/A6/1454:1458		No text annotation
Not in a motif group
J3_4V88_0381/A6/1215:1220,
1/A6/1263:1267,
1/A6/1442:1448		No text annotation
Not in a motif group
J3_4V88_0391/A6/1283:1288,
1/A6/1327:1332,
1/A6/1419:1424		No text annotation
Not in a motif group
J3_4V88_0401/A6/1336:1338,
1/A6/1386:1389,
1/A6/1412:1415		No text annotation
Not in a motif group
J3_4V88_0411/A6/1470:1474,
1/A6/1533:1540,
1/A6/1571:1574		No text annotation
Not in a motif group

Problematic loops

No problematic loops


Coloring options:
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